View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16662_high_33 (Length: 254)
Name: NF16662_high_33
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 6748253 - 6748031
Alignment:
| Q |
22 |
tcctaaataatcagatccatcgtgtatggaagcttcgttactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggttttcttcttc |
121 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6748253 |
tcctaaataatcagatccatcatgtatggaagcttcattactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggttttcttctcc |
6748154 |
T |
|
| Q |
122 |
atggagattctatccatgaaatcatgaaaaccctctccgtacatatctcttcggacccacaatcttttgtaggatgaatagacaccgtcatagaacacag |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6748153 |
atggagattctatccatgaaattatgaaaaccctctccgtacatatctcttcggacccacaatcttttgtaggatgaatagacaccgtcatagaacacag |
6748054 |
T |
|
| Q |
222 |
gcagaacaatgagaccatctgtg |
244 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6748053 |
gcagaacaatgagaccatctgtg |
6748031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 6542894 - 6543015
Alignment:
| Q |
48 |
tggaagcttcgttactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggttttcttcttcatggagattctatccatgaaatcatg |
147 |
Q |
| |
|
|||||||||| || |||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| || |||||||||| |||||||| |
|
|
| T |
6542894 |
tggaagcttcattgctgatttctgctacccaactcatgaacttgtcttcatcttcggaagaggttttctccttcattgaaattctatccagaaaatcatg |
6542993 |
T |
|
| Q |
148 |
aaaaccctctccgtacatatct |
169 |
Q |
| |
|
|||| ||||||| ||||||||| |
|
|
| T |
6542994 |
aaaagcctctccatacatatct |
6543015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 6502960 - 6503147
Alignment:
| Q |
48 |
tggaagcttcgttactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggttttcttcttcatggagattctatccatgaaatcatg |
147 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||| | ||||||||||||||| ||||| ||| | |||| ||||| || |||||||| || | ||||| |
|
|
| T |
6502960 |
tggaagcttcattagtgactgctgctacccaagtcatgaacttgtcttcgtcttcagaacatgtttccttctcgatcgagattctgtctacaaaatc--- |
6503056 |
T |
|
| Q |
148 |
aaaaccctctccgtacatatctcttcggacccacaatcttttgtaggatgaatagacaccgtcatagaacacaggcagaacaatgagaccatctgtg |
244 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
6503057 |
------ctctccaaagatatctcgtcggacccacaatcttttgtcggatgaatagacatcatcatagaacacagacagaaaaatgagaccatctgtg |
6503147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 6506458 - 6506650
Alignment:
| Q |
48 |
tggaagcttcgttactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggttttcttcttcatggagattctatccatgaaatcatg |
147 |
Q |
| |
|
||||||||| ||| |||| ||||||| ||| | ||| ||||||||||||||| | |||||||||| || | ||| ||||| | |||| ||||||| |
|
|
| T |
6506458 |
tggaagcttgattagtgatagctgctatccaagtcataaacttgtcttcatctgcagaagaggtttcctccagcatcaagattttgtccacataatcatg |
6506557 |
T |
|
| Q |
148 |
aaaaccctctccgtacatatctcttcggacccacaatcttttgtaggatgaatagacaccgtcatagaacacaggcagaacaatgagaccatc |
240 |
Q |
| |
|
|||| | ||| | ||| |||||||| | |||| || |||||| |||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
6506558 |
aaaagcatctacatacgtatctcttggtacccgcacaattttgtcggatgaatagacgccatcatagaacacaggcagaacaataagaccatc |
6506650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 6737889 - 6737699
Alignment:
| Q |
48 |
tggaagcttcgttactgattgctgctacccatgccatgaacttgtcttcatcttccgaagaggt--tttcttctt-catggagattctatccatgaaatc |
144 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||| |||| |||| ||| ||||||||||||| |||| |
|
|
| T |
6737889 |
tggaagcttcatcactgatttctgctacccaactcatgaacttgtcttcatcttcgaaagaggttgtttcctcttccattgagattctatccagaaaatt |
6737790 |
T |
|
| Q |
145 |
atgaaaaccctctccgtacatatctcttcggacccacaatcttttgtaggatgaatagacaccgtcatagaacacaggcagaacaatgagaccatct |
241 |
Q |
| |
|
||| ||| |||||||| |||||||| || ||||||| ||| || ||||||||||| |||||||||| ||| | ||||||| |||||||| |
|
|
| T |
6737789 |
atgtaaagcctctccgaacatatct------tcctgcaatcttctgttgggggaatagacaccatcatagaacaaaggtaaaacaatgggaccatct |
6737699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University