View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_40 (Length: 221)
Name: NF16662_high_40
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 55869100 - 55868911
Alignment:
| Q |
16 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
115 |
Q |
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| T |
55869100 |
cagagagaggattaatatatctttcgtcatcctttcaataagatatgtacgtactgcatcattatacatctcgctaatatctgaattcggttagtgtgtt |
55869001 |
T |
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| Q |
116 |
tacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaag |
205 |
Q |
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| T |
55869000 |
tacaaatgaaaatatggttgcaggaaggttaaaacaaaatcattgttcctcttttcctcccttgattgtttaaacatttgcactagtaag |
55868911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 31537739 - 31537856
Alignment:
| Q |
79 |
atacatctcgctaa-tatctgaattcggttagtgtgtttacaaatgaaaatatagttgcaggaaggttaaaacaaaatcattgttcctcttttcctccct |
177 |
Q |
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| T |
31537739 |
atacatctcggtaaatatctgaattcggttcgtgtgagtacaaaggaaaatatagctgcaccaagtttaaaacaaaatcacccttccacttttcattcct |
31537838 |
T |
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| Q |
178 |
tgattgtttaaacatttg |
195 |
Q |
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| T |
31537839 |
tgattgtttaaacatttg |
31537856 |
T |
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