View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_8 (Length: 499)
Name: NF16662_high_8
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 56277641 - 56277231
Alignment:
| Q |
13 |
cagagatagatggttggatttggggaaggaaaacaggtacggcagcaaagaattcctttacaagatgacaaaagcacaacatcttgaggaagaaaagaaa |
112 |
Q |
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| T |
56277641 |
cagagatagatggttggatttggggaaggaaaacaggtacggcagcaaacaattcctttacaggaagccaaaacaacaacatcttgaggaagaaaagaaa |
56277542 |
T |
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| Q |
113 |
aaacattgtggtgaacaactagtttagcagcgtt---tttgggttggacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatc |
209 |
Q |
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| T |
56277541 |
aaacattgtggtgaacaactagtttagcagcgttgtttttgggttccacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatc |
56277442 |
T |
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| Q |
210 |
ttgaacaataaaagcatttaaaacaagattagtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcat |
309 |
Q |
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| T |
56277441 |
ttgaacaataaaaccatttaaaacaagatttgtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcat |
56277342 |
T |
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| Q |
310 |
ttcatgctaagcaaaggcttggccggaacgcgtgtgagaatatgagagattacgtctctgttcagagacccctcctcaatctcatcattctcaaccttaa |
409 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| | |||||||||| |
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| T |
56277341 |
ttcatgctaagcaaaggtttggccggaacgcgtgtgagaatatgagagatgacgtctctgttgagagaaccctcctcactctcatcactatcaaccttaa |
56277242 |
T |
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| Q |
410 |
gcaacttcttc |
420 |
Q |
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| T |
56277241 |
gaatcttcttc |
56277231 |
T |
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