View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_10 (Length: 496)
Name: NF16662_low_10
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 29338933 - 29339225
Alignment:
| Q |
18 |
ctatgcacctgttttgtcatgcacaccaaaaaatgaaattatatt-attcaatcatatatatgtaccaaatgtacttgcttgtttactagatagtagata |
116 |
Q |
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| T |
29338933 |
ctatgcacctgttgtgtcatgcaccccaaaaaatgaaattatatttattcaattatatata----ccaaatgtacttgcttgtttactaga-------ta |
29339021 |
T |
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| Q |
117 |
cttagatagaccttttaataagtctggctattattcctctggttagttttcttcaaaatcaatatactgcattcatatcaattatattatattcaaaata |
216 |
Q |
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| T |
29339022 |
cttagatagaccgtttaataagtctggctatcattcctttggttagttttcttcaaactcaatatactgcattcatatcaattatattatattcaaaata |
29339121 |
T |
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| Q |
217 |
gactctccaaatattataattaattgaaagtcatcagaggataataatataaagaaataacccttcaaagggccaattgtattcatatcaaaagggtttt |
316 |
Q |
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| T |
29339122 |
gactctccaaatattataattaattgaaagtcatcaaaggctaataatataaagaaataacccttcaaagggccaattgtattcatatcaaaagggtttg |
29339221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 123 - 320
Target Start/End: Complemental strand, 29343888 - 29343691
Alignment:
| Q |
123 |
tagaccttttaataagtctggctattattcctctggttagttttcttcaaaatcaatatactgcattcatatcaattatattatattcaaaatagactct |
222 |
Q |
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| T |
29343888 |
tagaccgtttaataagtctggctattattcctttgtttagttttcttcaaaatcaatatactgcattcatatcaattatattatattcaaaatagactct |
29343789 |
T |
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| Q |
223 |
ccaaatattataattaattgaaagtcatcagaggataataatataaagaaataacccttcaaagggccaattgtattcatatcaaaagggtttttgct |
320 |
Q |
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| T |
29343788 |
ccaaatattataattaattgaaagtcatcaaaggataataatataaagaaataacccttcaaagggccaattgtattcatatcaaaagggtttgtgct |
29343691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 354 - 488
Target Start/End: Original strand, 29339225 - 29339359
Alignment:
| Q |
354 |
tcttggtgacaacatgccaattgtattgcatattggtcaaaagtttggccttaattaaaagtgtggaaattgtttaggttacccatagataagaaaatgt |
453 |
Q |
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| T |
29339225 |
tcttggtgacaacatgccaattgtattgcatattggtcaaaagtttggccttaattaaaagtgtggaaattgtttaggttacccatagataagaaaatgt |
29339324 |
T |
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| Q |
454 |
aagtacgtacttccctctataaattgattttcttc |
488 |
Q |
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| T |
29339325 |
aagtacgtacttccctctataaattgatattcttc |
29339359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 354 - 481
Target Start/End: Complemental strand, 29343691 - 29343566
Alignment:
| Q |
354 |
tcttggtgacaacatgccaattgtattgcatattggtcaaaagtttggccttaattaaaagtgtggaaattgtttaggttacccatagataagaaaatgt |
453 |
Q |
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| T |
29343691 |
tcttggtgacaacatgccaattgtattgcatattggtcaaaagtttggccttaattaaaa--gtgaaatttttttaggttacccatagataagaaaaatt |
29343594 |
T |
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| Q |
454 |
aagtacgtacttccctctataaattgat |
481 |
Q |
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| T |
29343593 |
aagcacgtactatcctctataaattgat |
29343566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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