View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_11 (Length: 489)
Name: NF16662_low_11
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 11353038 - 11352583
Alignment:
| Q |
15 |
cataggttgaatctgatatcagtccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaatat |
114 |
Q |
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| T |
11353038 |
cataggttgaatctgatatcagtccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaatat |
11352939 |
T |
|
| Q |
115 |
caacaaagtaataagttgatgttattcatgttgacctaaatgtttcttattctataattatcaaatgtgtgaagcaatgtcgttttagtctttacaagaa |
214 |
Q |
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| T |
11352938 |
caacaaagtaataagttgatgttattcatgttgacctaaatgtttcttattctataattatcaaatgtgtgaagcaatgtcgttttagtctttacaagaa |
11352839 |
T |
|
| Q |
215 |
tcgaaattacagaaatatcctcgagagtgtcgtcaattagtaattttatggatcaaattgactaatagaacacacattataataactaatcaaagacgta |
314 |
Q |
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| T |
11352838 |
tcgaaattacagaaatatcctcgagagtgtcgtcaattagtaattttatggatcaaattgactaatagaacacacattataataactaatcaaagacgta |
11352739 |
T |
|
| Q |
315 |
cacattcgaggactacaaagacaaataaaatacacaagcagagatatttttgcattttgatttatttatagactatattgaccgcgcttcacacatttaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11352738 |
cacattcgaggactacaaagacaaataaaatacacaagcagagatatttttgcattttgatttatttatagactatattgaccgcgcttcacacatttaa |
11352639 |
T |
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| Q |
415 |
gcacgaaaatgcatgtttattcaataaaaaatctctcatatatgtgcactcactgc |
470 |
Q |
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| T |
11352638 |
gcacgaaaatgcatgtttattcaataaaaaatctctcatatatgtgcactcactgc |
11352583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 21994553 - 21994626
Alignment:
| Q |
38 |
ccatgagaccaaagatactcagctctagagttgaaatctgtgttgaattccagaagaggattccctatctgcaa |
111 |
Q |
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| T |
21994553 |
ccatgagaccacagatattcagctctagagttgaaatctgtgtcaaaatccaagagaggatttccaatctgcaa |
21994626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 14934899 - 14934844
Alignment:
| Q |
69 |
tgaaatctgtgttgaattccagaagaggattccctatctgc--aatatcaacaaag |
122 |
Q |
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| T |
14934899 |
tgaaatctgtgttgaattcaagaaggggatttcctatctgcaaaatatcaacaaag |
14934844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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