View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_12 (Length: 475)
Name: NF16662_low_12
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 16977923 - 16977454
Alignment:
| Q |
1 |
tacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatattccat |
100 |
Q |
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| T |
16977923 |
tacttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatagtccat |
16977824 |
T |
|
| Q |
101 |
cttccacaaagaatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatcc |
200 |
Q |
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| T |
16977823 |
cttccacaaagaatgaggagatgaaggataaaagtccttctgtaaacaatggtgaaatggagcattcagattatggtgaggagatgagcgataaaaatcc |
16977724 |
T |
|
| Q |
201 |
ttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaagaaggattcttttgtacacactgatgaa |
300 |
Q |
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| T |
16977723 |
ttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaagaaggattcttttgtacacactgatgaa |
16977624 |
T |
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| Q |
301 |
gtggagcattcagatcgaataaagggttcttcttcttcttcaaaccagaaggaaatatcagatatacaaaaggcagtgcaaaatgtctctgatgatgatg |
400 |
Q |
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| T |
16977623 |
gtggagcattcagatcgaataaagggttcttcttcttcttcaaaccagaaggaaatatcagatatacaaagggcagtgcaaaatgtctctgatgatgatg |
16977524 |
T |
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| Q |
401 |
taaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaattatgatgatgt |
470 |
Q |
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| T |
16977523 |
taaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaattatgacgatgt |
16977454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 10601873 - 10601969
Alignment:
| Q |
177 |
tgaggagatgagcgataaaaatccttctgtaaacaatgatgaagttgagcattcagattatggtagtgtagcaatttctaatgcctttgagaagaag |
273 |
Q |
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| T |
10601873 |
tgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggtagtgtagcaacttctactacctttgagaagaag |
10601969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 10601871 - 10601936
Alignment:
| Q |
112 |
aatgaggagatgaaggataaaagtccttatgtaaacaatggtgaaatggagcattcagattatggt |
177 |
Q |
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| T |
10601871 |
aatgaggaggtgaaggataaaagtccttctataaagaatgatgaagtggagcattcagattatggt |
10601936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 16968664 - 16968577
Alignment:
| Q |
23 |
tggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatattccatcttccacaaa |
110 |
Q |
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| T |
16968664 |
tggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaatgttgagaatagtccatcttccacaaa |
16968577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 459
Target Start/End: Complemental strand, 16977463 - 16977396
Alignment:
| Q |
392 |
atgatgatgtaaatgttagtaaagcaaaagaaagtgtgaatcttcatgatgatcttgatgttgtaaat |
459 |
Q |
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| T |
16977463 |
atgacgatgtaaatgttggcaaaaccaaagaaagtgtgaatgttcgtgatgattttgatgttgtaaat |
16977396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 17008058 - 17008001
Alignment:
| Q |
4 |
ttgaatgtggtcgaggatttggttagagaggtgatggataaacaaagtggaatttctg |
61 |
Q |
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| T |
17008058 |
ttgaatatggtggagaagttgattagagaggtgatggatagacaatgtggaatttctg |
17008001 |
T |
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