View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_13 (Length: 461)
Name: NF16662_low_13
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 277 - 443
Target Start/End: Original strand, 10158266 - 10158432
Alignment:
| Q |
277 |
cctgaacatatttgatagagttccttttcccaagctcgagaatcctatcacaataagcaacaaaaacctctccaatcccctccctctccaaatcagacaa |
376 |
Q |
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| T |
10158266 |
cctgaacatatttgatagagttccttttcccaagctcgagaatcctatcacaataagcaacaaaaacctctccaatcccctccctctccaaatcagacaa |
10158365 |
T |
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| Q |
377 |
caccacatcatgatccggagtttcaataacaacatcatgaaatccaaacccatccaacaccgaactt |
443 |
Q |
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| T |
10158366 |
caccacatcatgatccggagtttcaataacaacatcatgaaatccaaacccatccaacaccgaactt |
10158432 |
T |
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Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 10158028 - 10158198
Alignment:
| Q |
31 |
acatgtgtcggtaccagacaccgaacacacctttacacctttgatcaaaagtgtaggtgatgaagagctagtatcacaccaaatagaatnnnnnnnncta |
130 |
Q |
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| T |
10158028 |
acatgtgtcggtaccagacaccgaacacaccttt--------gatcaaaagtgtaggtgatgaagagctagtatcacaccaaatagaataaaaaacacta |
10158119 |
T |
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| Q |
131 |
cacttaatcttacaatattcaaaatgagtaaatcaacttctctcaagtctaaaccatacagttttcattcaattttctc |
209 |
Q |
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| T |
10158120 |
cacttaatcttacaatattcaaaatgagtaaatcaacttctctcaagtcgaaaccatacagttttcattcaattttctc |
10158198 |
T |
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