View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_14 (Length: 444)
Name: NF16662_low_14
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 68 - 444
Target Start/End: Complemental strand, 30978636 - 30978260
Alignment:
| Q |
68 |
aacttgggatttgaggagcattcatggggaacatcatggccagcaagaaactattcttgtagtttttgcaaaagagagtttaggtcagctcaagctttag |
167 |
Q |
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| T |
30978636 |
aacttgggatttgaggagcattcatggggaacatcatggccagcaagaaactattcttgtagtttttgcaaaagagagtttaggtcagctcaagctttag |
30978537 |
T |
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| Q |
168 |
gtggacatatgaatgtccatagaagagatagggcaagattaagatcatcattaatatcttcttgggttaattctgatcaatgccctaataataataaacc |
267 |
Q |
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| T |
30978536 |
gtggacatatgaatgtccatagaagagatagggcaagattaagatcatcattaatatcttcttgggttaattctgatcaatgccctaataataataaacc |
30978437 |
T |
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| Q |
268 |
aaaccctacccctacctcaactactccttgttcttctccactttatctctctttatcttctccaccttcaccttccttacctcatactatccatgatgat |
367 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30978436 |
aaaccctacccctagctcaactactccttgttcttctccactttatctctctttatcttctccaccttcaccttccttacctcatactatccatgatgat |
30978337 |
T |
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| Q |
368 |
aagaaaccaagattaacaccttctctatctcttcctcttttaaatcctcaaagaagtgaaatcatgatgagtaagag |
444 |
Q |
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| T |
30978336 |
aagaaaccaagattaacaccttctctatctcttcctcttttaaatcctcaaagaagtgaaatcatgatgagtaagag |
30978260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 30978686 - 30978657
Alignment:
| Q |
18 |
gaaattactacctgaacagaaacacaagag |
47 |
Q |
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| T |
30978686 |
gaaattactacctgaacagaaacacaagag |
30978657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 6889906 - 6889820
Alignment:
| Q |
119 |
tattcttgtagtttttgcaaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatagggcaaga |
205 |
Q |
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| T |
6889906 |
tattcttgtagcttttgtagaagagagtttaggtcagcacaagcattaggtggacatatgaatgttcatagaaaagatagagcaaga |
6889820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 30726683 - 30726622
Alignment:
| Q |
137 |
aaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatag |
198 |
Q |
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| T |
30726683 |
aaaagagagtttaggtctgctcaagctttaggtggtcacatgaatgttcatagaagagatag |
30726622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 34522612 - 34522679
Alignment:
| Q |
131 |
ttttgcaaaagagagtttaggtcagctcaagctttaggtggacatatgaatgtccatagaagagatag |
198 |
Q |
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||||| ||||||||||||||||| ||||||||| | ||||| || |||||| | ||||| |||||||| |
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| T |
34522612 |
ttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattcataggagagatag |
34522679 |
T |
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