View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_15 (Length: 438)
Name: NF16662_low_15
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 2 - 429
Target Start/End: Original strand, 2295900 - 2296337
Alignment:
| Q |
2 |
gcatggctttggagaacttctacagcatcttatttggtgaaacaagtaagtcctaatcaatatttacaaattcatgcaccactgcatcttatcttattat |
101 |
Q |
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| T |
2295900 |
gcatggctttggagaacttctacagcatcttatttggtgaaacaagtaagtcctaatcaatatttacaaattcatgcaccactgcatcttatcttattat |
2295999 |
T |
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| Q |
102 |
tatttcaacataaagaa-----------tgcattatttgtatgaacatttcacttctatagtgagtgtttttattccctttgtctgtttttggctactca |
190 |
Q |
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| T |
2296000 |
tatttcaacataaagaactatatcagaatgcattatttgtatgaacatttcacttctatagtcagtgtttttattccctttgtctgtttttggctcctca |
2296099 |
T |
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| Q |
191 |
aattcctaagtctaaaccttggaaagacttttgttttttagttggtaaattgagattttcaagatttgataaaatgattgctgtatctactgtgtggctt |
290 |
Q |
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| T |
2296100 |
a-ttcctaagtctaaaccttggaaagacttttgttttttagttggtaaatggagattttcaagatttgataaaatgattgctgtatctactgtgtggctt |
2296198 |
T |
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| Q |
291 |
ttaactttagctatttagcactgacattttaatttaaagatgagtttgacgtttaaaaccgacacattttattcaatcattttacattctcaagttattg |
390 |
Q |
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| T |
2296199 |
ttaactttagctatttagcattgacattttaatttaaagacgagtttggcgtttaaaaccgacacattttattcaatcattttacattctcaagttattg |
2296298 |
T |
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| Q |
391 |
tagtacaaacatgttagttttgtatccgtgtgtctgtgc |
429 |
Q |
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| T |
2296299 |
tagtacaaacatgttagttttgtatccgtgtgtctgtgc |
2296337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 149 - 425
Target Start/End: Original strand, 2317449 - 2317724
Alignment:
| Q |
149 |
tagtgagtgtttttattccctttgtctgtttttggctactcaaattcctaagtctaaaccttggaaagacttttgttttttagttggtaaattgagattt |
248 |
Q |
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| T |
2317449 |
tagtgagtgtttttatcccctttgtctgtttttggctcctcgg-ttccaaagtctaaaccttggaaagacttttgtgttttagttggtaaatggagattt |
2317547 |
T |
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| Q |
249 |
tcaagatttgataaaatgattgctgtatctactgtgtggcttttaactttagctatttagcactgacattttaatttaaagatgagtttgacgtttaaaa |
348 |
Q |
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| T |
2317548 |
tcaagatttgataaaatgattgttgtatctattgtgtggcttttaactttagctatttagcaccgacttttcaattaaaagatgtgtttggtgtccaaaa |
2317647 |
T |
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| Q |
349 |
ccgacacattttattcaatcattttacattctcaagttattgtagtacaaacatgttagttttgtatccgtgtgtct |
425 |
Q |
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| T |
2317648 |
ccgacacattttattcaaccattttacttactcaaattattatagtacaagcatgttagttttatgtccgtatgtct |
2317724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 2316790 - 2316838
Alignment:
| Q |
45 |
aagtaagtcctaatcaatatttacaaattcatgcaccactgcatcttat |
93 |
Q |
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| T |
2316790 |
aagtaagtcctgatcaatatttacaaattcatgcaccactacatcttat |
2316838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 2317036 - 2317069
Alignment:
| Q |
115 |
agaatgcattatttgtatgaacatttcacttcta |
148 |
Q |
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| T |
2317036 |
agaatgcattatttgtatgaacatttcacttcta |
2317069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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