View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16662_low_16 (Length: 437)
Name: NF16662_low_16
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 38252948 - 38252528
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252948 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
38252849 |
T |
|
| Q |
101 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252848 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
38252749 |
T |
|
| Q |
201 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252748 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
38252649 |
T |
|
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38252648 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaa |
38252549 |
T |
|
| Q |
401 |
acaaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38252548 |
acaaattcataatgaactatt |
38252528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 43156594 - 43157014
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156594 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
43156693 |
T |
|
| Q |
101 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156694 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
43156793 |
T |
|
| Q |
201 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156794 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
43156893 |
T |
|
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43156894 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaa |
43156993 |
T |
|
| Q |
401 |
acaaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43156994 |
acaaattcataatgaactatt |
43157014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 11473918 - 11474338
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11473918 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
11474017 |
T |
|
| Q |
101 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474018 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
11474117 |
T |
|
| Q |
201 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474118 |
atgagttgttatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
11474217 |
T |
|
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11474218 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaa |
11474317 |
T |
|
| Q |
401 |
acaaattcataatgaactatt |
421 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
11474318 |
acaaattcataaagaactatt |
11474338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 28246118 - 28245713
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28246118 |
acttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacaaccc |
28246019 |
T |
|
| Q |
101 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28246018 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgct---------------ccacctaaagaaaaaagttcacaggtat |
28245934 |
T |
|
| Q |
201 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245933 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
28245834 |
T |
|
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245833 |
ggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
28245734 |
T |
|
| Q |
401 |
acaaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28245733 |
acaaattcataatgaactatt |
28245713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 50019678 - 50019454
Alignment:
| Q |
24 |
ataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
123 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50019678 |
ataacggtgataatggtggtcgttcagaaattgtgagttcagatgttctgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
50019579 |
T |
|
| Q |
124 |
caaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtactt |
223 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
50019578 |
caaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtactt |
50019479 |
T |
|
| Q |
224 |
gttttagttttacttgttttggtga |
248 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
50019478 |
gttttaattttacttgttttggtga |
50019454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 50019363 - 50019202
Alignment:
| Q |
263 |
catgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctg---cgcctacaacttatgagcccccacaagcacatgagt |
359 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50019363 |
catgtatcttagcttaataattttacataatcattttagtttgatggagtatcttgttctgcgtcgcctccaacttatgagcccccacaagcacatgagg |
50019264 |
T |
|
| Q |
360 |
ctcaagtcaattacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactatt |
421 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
50019263 |
atcaagtcaattacattgtcatgctaatggtaatttcaaaagcaaattcataaggaactatt |
50019202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 10465068 - 10465011
Alignment:
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
358 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
10465068 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
10465011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 43734720 - 43734663
Alignment:
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
358 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
43734720 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
43734663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 50673599 - 50673558
Alignment:
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcc |
342 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
50673599 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcc |
50673558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 19307810 - 19307390
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307810 |
acttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgaccc |
19307711 |
T |
|
| Q |
101 |
ggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307710 |
ggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtat |
19307611 |
T |
|
| Q |
201 |
atgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307610 |
atgagttgttatttaaagtacttgttttatttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcatttta |
19307511 |
T |
|
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19307510 |
ggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaa |
19307411 |
T |
|
| Q |
401 |
acaaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19307410 |
acaaattcataatgaactatt |
19307390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 283 - 421
Target Start/End: Complemental strand, 10124078 - 10123940
Alignment:
| Q |
283 |
tttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10124078 |
tttgacataatcattttaggttgatggagtatcttgttatgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatg |
10123979 |
T |
|
| Q |
383 |
ctaatggtaatttcaaaaacaaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10123978 |
ctaatggtaatttcaaaaacaaattcatattgaactatt |
10123940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10124138 - 10124075
Alignment:
| Q |
1 |
acttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
64 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124138 |
acttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
10124075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 25382033 - 25382452
Alignment:
| Q |
3 |
ttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccgg |
102 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
25382033 |
ttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaaattgtgagttcgaatgttatgcaagcaaaggggttcaaggtacgacccgg |
25382132 |
T |
|
| Q |
103 |
ttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382133 |
ttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaaaagttcacaggtatat |
25382232 |
T |
|
| Q |
203 |
gagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttagg |
302 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382233 |
gagttggtatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttagg |
25382332 |
T |
|
| Q |
303 |
ttgatggagtatcttgttctgcgcctacaacttatga-gcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25382333 |
ttgatggagtatcttgttctgcgcctacaacttatgatccccccacaagcacataagtctcaagtcaattacacagccatgctaatggtaatttcaaaaa |
25382432 |
T |
|
| Q |
402 |
caaattcataatgaactatt |
421 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
25382433 |
caaattcataaggaactatt |
25382452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 48794161 - 48794280
Alignment:
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaaccatgctaatggtaatttcaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
48794161 |
ggttgatggagtatcttgttctgcacctccaacttatgcgcccccacaagcacatgaggatcaattcaattacacagccatgctgatggtaatttcaaaa |
48794260 |
T |
|
| Q |
401 |
acaaattcataatgaactat |
420 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
48794261 |
acaaattcataaggaactat |
48794280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 48794087 - 48794140
Alignment:
| Q |
248 |
actgccataattttacatgtatcttagcttaataatttgacataatcattttaggtt |
304 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
48794087 |
actgccatgattttacatgtatcttagtt---taattttacataatcattttaggtt |
48794140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 25862743 - 25862800
Alignment:
| Q |
301 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
358 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
25862743 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
25862800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 27979093 - 27979145
Alignment:
| Q |
306 |
atggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
358 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
27979093 |
atggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
27979145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 5911504 - 5911543
Alignment:
| Q |
306 |
atggagtatcttgttctgcgcctacaacttatgagccccc |
345 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5911504 |
atggagtatcttgttccgcgcctccaacttatgagccccc |
5911543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University