View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_18 (Length: 407)

Name: NF16662_low_18
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_18
NF16662_low_18
[»] chr7 (17 HSPs)
chr7 (1-374)||(26204909-26205282)
chr7 (1-182)||(26224546-26224726)
chr7 (221-290)||(26224718-26224787)
chr7 (202-290)||(4682341-4682429)
chr7 (319-374)||(26224788-26224843)
chr7 (1-50)||(26121339-26121388)
chr7 (1-50)||(26251872-26251921)
chr7 (1-50)||(26129594-26129643)
chr7 (1-50)||(26156215-26156264)
chr7 (1-50)||(26180107-26180156)
chr7 (1-50)||(26243424-26243473)
chr7 (1-50)||(26298472-26298521)
chr7 (2-50)||(26278721-26278769)
chr7 (6-50)||(19102621-19102665)
chr7 (5-50)||(26192293-26192338)
chr7 (2-50)||(26208442-26208490)
chr7 (2-50)||(26227996-26228044)
[»] chr4 (3 HSPs)
chr4 (186-302)||(8239014-8239130)
chr4 (202-302)||(53303244-53303345)
chr4 (2-50)||(44904278-44904326)
[»] chr8 (2 HSPs)
chr8 (202-290)||(25641759-25641847)
chr8 (240-365)||(6634335-6634467)
[»] chr2 (3 HSPs)
chr2 (202-302)||(30269851-30269951)
chr2 (202-290)||(31331341-31331430)
chr2 (202-290)||(31338062-31338151)
[»] chr5 (3 HSPs)
chr5 (202-365)||(5075279-5075446)
chr5 (243-365)||(37191124-37191252)
chr5 (185-365)||(7413754-7413938)
[»] chr3 (1 HSPs)
chr3 (202-258)||(7400906-7400962)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 26204909 - 26205282
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaagattgctagagaacttgaaaaaaccagattagataattgaatttgaggttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
26204909 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaagattgctagagaacttgaaaaaaccagattagataattgaatttgaggatga 26205008  T
101 gttgatgacattaatttaaatattattgctctaggagttgcagctggtgtgattttataaaagttttttggttttgtaacatgatcactaatacatttac 200  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26205009 gttgatgacattaatttaa-tattattgctctacgagttgcagctggtgtgattttataaaagttttttggttttgtaacatgatcactaatacatttac 26205107  T
201 atgttttagtaa-cattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagtaacgctctt 299  Q
    |||||||||||| |||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
26205108 atgttttagtaaacattcaccttgcaacatttagtttatagttactaatatgaagatttctctaacattttttaataagtattacattagtaacgctctt 26205207  T
300 tttggtgtttattactaacttggtagcatttataccaaaacacatttctattccactaaaacaaaaccgtttcaa 374  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
26205208 tttagtgtttattactaacttggtagcatgtataccaaaacacatttctattccactaaaacaaaaccgtttcaa 26205282  T

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Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 26224546 - 26224726
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaagattgctagagaacttgaaaaaaccagattagataattgaatttgaggttga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
26224546 ttcttacaacaacttgattcaattgattgatgagctaaaatcattgaagattgctagagaacttgaaaaaaccagattagataattgaatttgaggatga 26224645  T
101 gttgatgacattaatttaaatattattgctctaggagttgcagctggtgtgattttataaaagttttttggttttgtaacat 182  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
26224646 gttgatgacattaattt-aatattattgctctaggagttgcagctggtgtgattttataaaagttttttggttttgcaacat 26224726  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 26224718 - 26224787
Alignment:
221 ttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagt 290  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
26224718 ttgcaacatttattttatagttactaatataaagatttctctaacattttttaataagtgttacattagt 26224787  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 4682341 - 4682429
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagt 290  Q
    ||||||||||||||| ||||||||||| || |||  |||||||||||||| |||||| |||||||||||||| ||||| ||||||||||    
4682341 tgttttagtaacatttatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattagt 4682429  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 26224788 - 26224843
Alignment:
319 ttggtagcatttataccaaaacacatttctattccactaaaacaaaaccgtttcaa 374  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
26224788 ttggtagcatttatatcacaacacatttctattccactaaaacaaaaccgtttcaa 26224843  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26121339 - 26121388
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
26121339 ttcttacaacaacttgattcagttgattgatgagctgaaatcattgaaga 26121388  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26251872 - 26251921
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
26251872 ttcttacaacaacttgattcagttgattgatgagctgaaatcattgaaga 26251921  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26129594 - 26129643
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||    
26129594 ttcttacaacaacttgattcaattgattgatgagctgaaatcattgaaga 26129643  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26156215 - 26156264
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||    
26156215 ttcttacaacaacttgattcagttgattgatgatctgaaatcattgaaga 26156264  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26180107 - 26180156
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||    
26180107 ttcttacaacaacttgattcagttgattgatgagctgaaatcattaaaga 26180156  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26243424 - 26243473
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||    
26243424 ttcttacaacaacttgattcagttgattgatgagctgaaatcgttgaaga 26243473  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26298472 - 26298521
Alignment:
1 ttcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||    
26298472 ttcttacaacaacttgattcaattgattgatgagctgaaatcattgaaga 26298521  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26278721 - 26278769
Alignment:
2 tcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||    
26278721 tcttacaacaacttgattcaattgattgatgagctgaaatcattgaaga 26278769  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 19102665 - 19102621
Alignment:
6 acaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
19102665 acaacaacttgattctgttgattgatgagctgaaatcattgaaga 19102621  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 26192293 - 26192338
Alignment:
5 tacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||    
26192293 tacaacaacttgattcagttcattgatgagctgaaatcactgaaga 26192338  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26208442 - 26208490
Alignment:
2 tcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||||| || || || ||||| ||||||||||||||||    
26208442 tcttacaacaacttgatgcaattaatagatgacctaaaatcattgaaga 26208490  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 26227996 - 26228044
Alignment:
2 tcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||||| || || || ||||| ||||||||||||||||    
26227996 tcttacaacaacttgatgcaattaatagatgacctaaaatcattgaaga 26228044  T

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Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 8239130 - 8239014
Alignment:
186 cactaatacatttacatgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattaca 285  Q
    ||||| ||||| || |||||||||||||||||||||||||||| || |||  |||||||||||||| |||||| |||||||||||||||||||| || ||    
8239130 cactagtacatatatatgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttaataagtgttgca 8239031  T
286 ttagtaacgctcttttt 302  Q
    |||||||| ||||||||    
8239030 ttagtaacactcttttt 8239014  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 53303345 - 53303244
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttt-tagttactaatataaagatttctctaacattttttaataagtattacattagtaacgctcttt 300  Q
    ||||||||||||||| ||||||||||| || |||   |||||||||||||| |||||| |||||||||||||||||||| || |||||||||| ||||||    
53303345 tgttttagtaacatttatcttgcaacacttgtttaagtagttactaatatagagatttttctaacattttttaataagtgttgcattagtaacactcttt 53303246  T
301 tt 302  Q
    ||    
53303245 tt 53303244  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 44904278 - 44904326
Alignment:
2 tcttacaacaacttgattcagttgattgatgagctaaaatcattgaaga 50  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||    
44904278 tcttacaacaacttggttcagttgatagatgagctgaaatcattgaaga 44904326  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 25641847 - 25641759
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagt 290  Q
    ||||||||||||||||||||||||||| || |||  |||||||||||||| |||||| |||||||||||||| ||||| ||||||||||    
25641847 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttctaacattttttagtaagtgttacattagt 25641759  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 365
Target Start/End: Complemental strand, 6634467 - 6634335
Alignment:
240 gttactaatataaagatttctctaacattttttaataagtattacattagtaacgctctttt----tggtgtt--tattactaacttggtag-catttat 332  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||| |||||  ||||||    | |||||  ||||||||| || ||||   |||||    
6634467 gttactaatatagagatttttctaacattttttaataagtgttacattggtaactttctttttcagtagtgttaatattactaatttagtagtgttttat 6634368  T
333 accaaaacacatttctattccactaaaacaaaa 365  Q
    | || ||||||||||||||||||||||||||||    
6634367 atcagaacacatttctattccactaaaacaaaa 6634335  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 30269951 - 30269851
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagtaacgctctttt 301  Q
    |||||||||||||||||| |||||||| || |||  |||||||||||||| ||||||  ||||||||||||||||||| || |||||||||| |||||||    
30269951 tgttttagtaacattcatattgcaacacttgtttaatagttactaatatagagattttactaacattttttaataagtgttgcattagtaacactctttt 30269852  T
302 t 302  Q
    |    
30269851 t 30269851  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 31331341 - 31331430
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctc-taacattttttaataagtattacattagt 290  Q
    ||||||||||||||||||||||||||| || |||  |||||||||||||| |||||| || |||||||||||| ||||| ||||||||||    
31331341 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagtgttacattagt 31331430  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 31338062 - 31338151
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctc-taacattttttaataagtattacattagt 290  Q
    ||||||||||||||||||||||||||| || |||  |||||||||||||| |||||| || |||||||||||| ||||| ||||||||||    
31338062 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagatttttcttaacattttttagtaagtgttacattagt 31338151  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 365
Target Start/End: Original strand, 5075279 - 5075446
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattacattagtaacgctctttt 301  Q
    ||||||| ||||||||| ||||||||| ||| ||  | ||||| ||||||||||||| ||||||||||||||| |||| ||||||| ||||| ||| |||    
5075279 tgttttaataacattcaccttgcaacacttacttaatggttaccaatataaagatttttctaacattttttaagaagtgttacattggtaacactcattt 5075378  T
302 t----ggtgtt--tattactaacttggtagcatttataccaaaacacatttctattccactaaaacaaaa 365  Q
    |     |||||  |||||||||||| ||||  |||||| || ||||||||  ||||||||||||||||||    
5075379 tcaggagtgttaatattactaacttagtagtgtttatatcataacacatt--tattccactaaaacaaaa 5075446  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 37191252 - 37191124
Alignment:
243 actaatataaagatttctctaacattttttaataagtattacattagtaacgctctttt----tggtgtt--tattactaacttggtagcatttatacca 336  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||| ||||| |||||||    |  ||||  |||||||||||| ||||  |||||| |     
37191252 actaatatagagatttttttaacattttttaataagtgttacattggtaacactctttttcagtactgttaatattactaacttagtagtgtttatatcc 37191153  T
337 aaacacatttctattccactaaaacaaaa 365  Q
     ||||||||||||||||||||||||||||    
37191152 gaacacatttctattccactaaaacaaaa 37191124  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 7413938 - 7413754
Alignment:
185 tcactaatacatttacatgttttagtaacattcatcttgcaacatttattttttagttactaatataaagatttctctaacattttttaataagtattac 284  Q
    |||||| |||| |||  ||||||||||||||||| ||| ||||| ||| ||  | |||| ||||||| | |||| |||||| ||||||||||||| ||||    
7413938 tcactactacacttatgtgttttagtaacattcaccttacaacacttacttaatggttattaatatagaaatttttctaaccttttttaataagtgttac 7413839  T
285 attagtaacgctcttttt----ggtgtt--tattactaacttggtagcatttataccaaaacacatttctattccactaaaacaaaa 365  Q
    ||| |||| |||||||||     |||||  |||||||||||| ||||  |||||| || ||||||||  |||||| |||||||||||    
7413838 attggtaatgctctttttcaggagtgttaatattactaacttagtagtgtttatatcataacacatt--tattcctctaaaacaaaa 7413754  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 7400906 - 7400962
Alignment:
202 tgttttagtaacattcatcttgcaacatttattttttagttactaatataaagattt 258  Q
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7400906 tgttttagtaacattcatcttgcaacacttgtttaatagttactaatatagagattt 7400962  T

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