View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_19 (Length: 406)

Name: NF16662_low_19
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_19
NF16662_low_19
[»] chr8 (15 HSPs)
chr8 (1-388)||(6424020-6424407)
chr8 (129-388)||(6331823-6332082)
chr8 (153-388)||(7459011-7459246)
chr8 (205-388)||(6363115-6363298)
chr8 (205-388)||(6352176-6352359)
chr8 (129-385)||(6321318-6321577)
chr8 (103-388)||(6274439-6274724)
chr8 (203-338)||(6370027-6370162)
chr8 (4-72)||(6352616-6352684)
chr8 (277-388)||(7471409-7471520)
chr8 (236-294)||(6263345-6263403)
chr8 (4-67)||(6363421-6363484)
chr8 (245-295)||(6288778-6288828)
chr8 (206-249)||(6410251-6410294)
chr8 (4-75)||(7459412-7459483)
[»] chr2 (1 HSPs)
chr2 (245-327)||(42688652-42688734)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 6424407 - 6424020
Alignment:
Q  1 aacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaagatattaatgtttttctagagaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424407 aacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaagatattaatgtttttctagagaaat 6424308  T
Q  101 ggttcatttttattcaaatgatgtacggtgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  6424307 ggttcatttttattcaaatgatgtacggtgactaaattatattttgttgattaggctatccaaaacaacaaattgtacatccttgatcactatgacatag 6424208  T
Q  201 tatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424207 tatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggc 6424108  T
Q  301 gattgaactaagtaagccacatcctgacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6424107 gattgagctaagtaagccacatcctgacgatgatagttatggacctgttagtgaagtttacttccctgcaagtgaaggtgttgaagct 6424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 129 - 388
Target Start/End: Complemental strand, 6332082 - 6331823
Alignment:
Q  129 tgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgc 228  Q
    ||||||||||||||||| |||| ||||||||||||||| |||  || ||||| ||||||||| |||||  | ||| |||||||||||||||||||||  |    
T  6332082 tgactaaattatatttttttgaataggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactc 6331983  T
Q  229 aactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgattgaactaagtaagccacatcctgac 328  Q
    |||||| |||||||| |||||| | |||||| || ||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||||||||||| |     
T  6331982 aactgatacaaaggcatatgctacgagaaccttcattttcttacaaaatgatggaactttgaagccattggccattgagctaagtaagccacatcctcaa 6331883  T
Q  329 gatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
    || ||||||||||| ||| ||||| | |||||||| ||||||||||||||||||||||||    
T  6331882 gaagatagttatggtcctgttagtaatgtttacttgcctgcaagtgaaggtgttgaagct 6331823  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 153 - 388
Target Start/End: Complemental strand, 7459246 - 7459011
Alignment:
Q  153 aggctatccaaaaccacaaactgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgc 252  Q
    |||||||||||||| | ||| ||||||| ||||||||| | ||  || ||  |||||||||||||| |||||||||||||||||||||| |||||||  |    
T  7459246 aggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgcaactgagacaaagtcctatgcaac 7459147  T
Q  253 tagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgattgaactaagtaagccacatcctgacgatgatagttatggacctcttagt 352  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||| |||||| ||| | | ||||||||  || ||| |||||    
T  7459146 tagaaccattcttttcttgcaaaatgatggaactttgaagccattggccattgaactaagtaggccacaccctcaaggtgatagtttaggtcctgttagt 7459047  T
Q  353 gaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
     | |||||||| ||||||||||||||||||||||||    
T  7459046 aatgtttacttgcctgcaagtgaaggtgttgaagct 7459011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 6363298 - 6363115
Alignment:
Q  205 tccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgatt 304  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||| |||||| |||| |||    
T  6363298 tccatatttgaggaaaataaatgcaaccgagactaaggcctatgctactagaaccattcttttcttgcaagatgatggaactttgaagccattggccatt 6363199  T
Q  305 gaactaagtaagccacatcctgacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
    |||||||||| |||||| ||| | | |||||||| ||| ||| ||||  |||||||||| ||||||||||||||||||||||||    
T  6363198 gaactaagtaggccacaccctcaaggtgatagttttggtcctgttagcaaagtttacttgcctgcaagtgaaggtgttgaagct 6363115  T

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Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 6352359 - 6352176
Alignment:
Q  205 tccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgatt 304  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  6352359 tccatatttgaggaaaataaatgcaaccgagacaaaggcctatgctaccagaaccatacttttcttgcaagatgatggaactttgaagccactggccatt 6352260  T
Q  305 gaactaagtaagccacatcctgacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
    |||||||| | |||||| ||| | | |||||||| ||| ||| ||||  | |||||||| || |||||||||||||||||||||    
T  6352259 gaactaagcaggccacaccctcaaggtgatagttttggtcctgttagcaatgtttacttgcccgcaagtgaaggtgttgaagct 6352176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 129 - 385
Target Start/End: Complemental strand, 6321577 - 6321318
Alignment:
Q  129 tgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgc 228  Q
    |||||||||||||||||||| | ||||||||||||||| |||  || ||||| ||||||||| |||||  | ||||||||||| ||||||||||||||||    
T  6321577 tgactaaattatattttgttcaataggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgaggaaaataaatgc 6321478  T
Q  229 aactgagacaa---aggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgattgaactaagtaagccacatcct 325  Q
    | |||| ||||   |||| |||||| ||||||| ||| ||||||| ||||||||||||||||| |||||| | || ||||| |||||||  |||||||||    
T  6321477 agctgatacaacaaaggcatatgctactagaactatcattttcttacaaaatgatggaactttgaagccattagccattgagctaagtagcccacatcct 6321378  T
Q  326 gacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaa 385  Q
     | | |||||| | ||| ||| ||||||| |||||||| |||||||  ||||||||||||    
T  6321377 caggctgatagctttggtcctgttagtgatgtttacttgcctgcaaaggaaggtgttgaa 6321318  T

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Target: chr8; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 388
Target Start/End: Complemental strand, 6274724 - 6274439
Alignment:
Q  103 ttcatttttattcaaatgatgtacggtgactaaattatat-tttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatagt 201  Q
    ||||||||||||||||| || | |  ||||| |||||||| ||| || | ||||||||||||| | ||||| ||||||| |||||| || | |||    |    
T  6274724 ttcatttttattcaaattat-tgcaatgactgaattatatatttttttaataggctatccaaaccaacaaattgtacatacttgattaccacgactcgtt 6274626  T
Q  202 atatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcg 301  Q
    |||||||||| ||||||||||||||||| |||| |||||||| |||||| | |||||| |||||||||| ||||||||||||||||| |||||  ||||     
T  6274625 atatccatatctgaggaaaataaatgcagctgatacaaaggcatatgctacgagaaccttccttttcttacaaaatgatggaactttgaagccgttggcc 6274526  T
Q  302 attgaactaagtaagccacatcctgacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaaggtgttgaagct 388  Q
    ||||| |||||||  ||||||||| | | |||||| | ||| ||| |||||||  ||||||| ||||||||||||||||||||||||    
T  6274525 attgagctaagtagcccacatcctcaggctgatagctttggtcctgttagtgatatttacttgcctgcaagtgaaggtgttgaagct 6274439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 6370162 - 6370027
Alignment:
Q  203 tatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcga 302  Q
    |||||||||||||||||| |||||| ||||||  ||||| ||||||||||||||||||| |||||  |  || ||||||||||||| || ||| |||| |    
T  6370162 tatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgctgctagaaccattctttttgttaaagatgatggaactttgaatccattggcca 6370063  T
Q  303 ttgaactaagtaagccacatcctgacgatgatagtt 338  Q
    |||| ||||||  |||||||||| | | ||||||||    
T  6370062 ttgagctaagtttgccacatcctaatggtgatagtt 6370027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 6352684 - 6352616
Alignment:
Q  4 accagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca 72  Q
    ||||||||||||||||||||| | |||||||||||| |||| ||| |||| ||||||||||||||||||    
T  6352684 accagcaccataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgaca 6352616  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 388
Target Start/End: Complemental strand, 7471520 - 7471409
Alignment:
Q  277 tgatggaactttaaagccactggcgattgaactaagtaagccacatcctgacgatgatagttatggacctcttagtgaagtttacttccctgcaagtgaa 376  Q
    |||||||||||| |||||| |||| ||||||||||||| |||||| ||| | | |||||||| ||| ||| ||||| | |||||||| || |||||||||    
T  7471520 tgatggaactttgaagccattggccattgaactaagtaggccacaccctcaaggtgatagttttggtcctgttagtaatgtttacttgcccgcaagtgaa 7471421  T
Q  377 ggtgttgaagct 388  Q
    || || ||||||    
T  7471420 ggcgtggaagct 7471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 6263403 - 6263345
Alignment:
Q  236 acaaaggcctatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagcc 294  Q
    ||||||||||||||| | |||||| ||||||||||| ||| ||||||||||||||||||    
T  6263403 acaaaggcctatgcttcaagaaccgtccttttcttgaaaagtgatggaactttaaagcc 6263345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 6363484 - 6363421
Alignment:
Q  4 accagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaa 67  Q
    ||||||||||||||||||||||| ||| |||||||| |||  ||| |||| |||||||||||||    
T  6363484 accagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa 6363421  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 6288828 - 6288778
Alignment:
Q  245 tatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagcca 295  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||| ||||||    
T  6288828 tatgctactagaaccatcattttcttacaaaatgatggaacttttaagcca 6288778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 6410294 - 6410251
Alignment:
Q  206 ccatatttgaggaaaataaatgcaactgagacaaaggcctatgc 249  Q
    ||||||||||||||||||||||||||||   |||||||||||||    
T  6410294 ccatatttgaggaaaataaatgcaactggcgcaaaggcctatgc 6410251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 7459483 - 7459412
Alignment:
Q  4 accagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaa 75  Q
    |||||||| |||||||  || || |||||||||||| |||| ||| |||| ||||||||||||||| |||||    
T  7459483 accagcacaataaccattgatcacttggagccaaacatgggaggggtcacagtagaacaggtaatgtcacaa 7459412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 42688652 - 42688734
Alignment:
Q  245 tatgctgctagaaccatccttttcttgcaaaatgatggaactttaaagccactggcgattgaactaagtaagccacatcctga 327  Q
    |||||| |||| || ||||||||| |  || | ||||||| |||||||||| ||||||||||| |||||  ||||||||||||    
T  42688652 tatgctactaggacaatccttttcctaaaagaagatggaaatttaaagccagtggcgattgaattaagtttgccacatcctga 42688734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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