View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_2 (Length: 839)
Name: NF16662_low_2
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 72 - 819
Target Start/End: Complemental strand, 29237879 - 29237121
Alignment:
| Q |
72 |
aaaagtaacgttaggagataacactgtagattgattatataaacactgtggtctgtgggg-aactagttgctacattagggaatgatctgaatagattga |
170 |
Q |
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| T |
29237879 |
aaaagtaacgttaggggataacgctgtaggttgattatgtaaaaactgtggtctgtgggggaactagttgctacattagggaatgatctgaatagattga |
29237780 |
T |
|
| Q |
171 |
ctattggaacacttgagataacactgtaggttgatttttgtacattttattttggatgaactgaaggttgccatcaaatgaccnnnnnnnn--tgaccaa |
268 |
Q |
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| T |
29237779 |
ctattggaacacttgagataacactgtaggttgatttttgcacattttattttggatgaactgaacgttgccatcaaatgacccaaaaaaaaatgaccaa |
29237680 |
T |
|
| Q |
269 |
agctttaaatttccaatctggaatgctggacaacttgttattatgcattcatagcatgttcataaatagtaagttacgagtacacaacatgtttatatta |
368 |
Q |
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| T |
29237679 |
agctttaattttccaatctggaatgctggacaacttgttattatgcattcatagcatgttcataaatagtaagttacgagtacacaacatgtttatatta |
29237580 |
T |
|
| Q |
369 |
aaatgtacatgtgttaatttcgccgtgctttgagcaagctgcaannnnnnncctatcggagattttctctt--------ctcacaatggtttaagctaca |
460 |
Q |
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| T |
29237579 |
aaatgtacatgtgttaatttcgccgtgctttgagcaagctgcaatttttttcctatcggagattttctctttggttattctcacaatggtttaagctaca |
29237480 |
T |
|
| Q |
461 |
aatatagtttttgataatgttttttcgagatatgttaggttcacttcaattttttctgaagtatttccggtacttttccaaggcagtaatttttcctgaa |
560 |
Q |
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| T |
29237479 |
aatatagtttttgataatgttttttcgagatatgttaggttcacttcaattttttctgaagtatttccggtacttttccaaggcagtaatttttcctaaa |
29237380 |
T |
|
| Q |
561 |
gtatactgaactatactttaaattagtctaaattcattaaaagatcagttctcacaagagtcttgcctctaaacaagacactttctagtcgcaagtcctg |
660 |
Q |
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| T |
29237379 |
gtatactgaactatattttaaattagtctaaattcattaaaagatcagttctcacaagagtcttgcctctaaacaagacactttctagtcgcaagtcctg |
29237280 |
T |
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| Q |
661 |
cttctaagtgtatccgatcgaagctgtccaaaaccagattagaagactcctggaattgaagtaaatgatttattctatagatagattgaaatggggagca |
760 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29237279 |
cttctaagtgtatccgatcgaagctgtccaaaaccagattagaagactcctggaattgaagtaaatgatttattctatggatagattgaaatggggagca |
29237180 |
T |
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| Q |
761 |
gtggtagaagactatgagtctgaaactgttgctttagcttgtagaaatctgaaactgtt |
819 |
Q |
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| T |
29237179 |
gtggtagaagactatgagtctgaaactgttgctttagcttgtagaaatctgaaactgtt |
29237121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 29237974 - 29237914
Alignment:
| Q |
13 |
atcaaattccttccaaatctcaatccaaaactcgacgtagcggattgagagtttgtcttaa |
73 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
29237974 |
atcaaattccttccaaatctcaatccaaaactggacatagcggattgagagtttgtcttaa |
29237914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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