View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_20 (Length: 397)

Name: NF16662_low_20
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_20
NF16662_low_20
[»] chr8 (1 HSPs)
chr8 (13-380)||(1531808-1532175)
[»] chr1 (1 HSPs)
chr1 (217-312)||(26413522-26413617)
[»] chr5 (6 HSPs)
chr5 (13-89)||(41486292-41486368)
chr5 (20-83)||(41487165-41487228)
chr5 (13-80)||(41488910-41488977)
chr5 (41-83)||(41488038-41488080)
chr5 (41-83)||(41489748-41489790)
chr5 (13-73)||(36236160-36236220)
[»] chr2 (2 HSPs)
chr2 (13-79)||(10850697-10850763)
chr2 (13-79)||(10878211-10878277)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 1532175 - 1531808
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaatcgacgagtacattagctatataccccct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1532175 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagtactatgaatcgacgagtacattagctatataccccct 1532076  T
Q  113 ggcataccaaattcttctcatgtcgcataccacaaacccgtatctatactggtaccgtgtagcagcccaaattacgaattatgtgactatgctatcaacc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1532075 ggcataccaaattcttctcatgtcgcataccacaaacccgtatctatactggtaccgtgtagcagcccaaattacgaattatgtgactatgctatcaacc 1531976  T
Q  213 atggtggcagaattgagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1531975 atggtggcagaattgagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctac 1531876  T
Q  313 taaatctaatcaagttttataattaaaaagtttaaattaagtgaatccgttagcacttgtcacattac 380  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1531875 taaatctaatcaagttttataattaaaaaatttaaattaagtgaatccgttagcacttgtcacattac 1531808  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 26413617 - 26413522
Alignment:
Q  217 tggcagaattgagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctac 312  Q
    |||||||||||||||| ||||||||||||||||||||||||  ||||| || ||| ||||||||||||||||||||| ||||||||||||| ||||    
T  26413617 tggcagaattgagtcagtcttctttctgatatcattaggcaatcaatcgagcattcgattattccaatttccctttgtatcaaccaattccactac 26413522  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 41486368 - 41486292
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaatcgacg 89  Q
    ||||| ||||||||| |||||||| |  |||||||||| |||||||||||| |||||||||| |||| ||| |||||    
T  41486368 ataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacg 41486292  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 41487228 - 41487165
Alignment:
Q  20 ttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactatgaa 83  Q
    |||||||| |||||||| |  |||||||| | |||||||||||| |||||||||||||||||||    
T  41487228 ttctacttgtttgcaatattaagatagctcactatacttaattaaatagtactagcactatgaa 41487165  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 41488977 - 41488910
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcactat 80  Q
    ||||| ||||||||| |||||||| |  |||||||| | |||||||||||| ||||||||||||||||    
T  41488977 ataatccttctacttgtttgcaatattaagatagctcactatacttaattaaatagtactagcactat 41488910  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 41488080 - 41488038
Alignment:
Q  41 agatagcttagtatacttaattagatagtactagcactatgaa 83  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  41488080 agatagctcactatacttaattaaatagtactagcactatgaa 41488038  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 41489790 - 41489748
Alignment:
Q  41 agatagcttagtatacttaattagatagtactagcactatgaa 83  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  41489790 agatagctcactatacttaattaaatagtactagcactatgaa 41489748  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 36236160 - 36236220
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtacta 73  Q
    ||||| |||||||||||||||||| |  |||||  ||| ||||||||||||| ||||||||    
T  36236160 ataatccttctacttttttgcaatattaagatatattactatacttaattaggtagtacta 36236220  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 10850763 - 10850697
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcacta 79  Q
    ||||| ||||||| |||||||||| |  |||||||||| ||||||||||||| || |||||| ||||    
T  10850763 ataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtacta 10850697  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 10878277 - 10878211
Alignment:
Q  13 ataattcttctacttttttgcaatgtctagatagcttagtatacttaattagatagtactagcacta 79  Q
    ||||| ||||||| |||||||||| |  |||||||||| ||||||||||||| || |||||| ||||    
T  10878277 ataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtacta 10878211  T

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