View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_21 (Length: 397)
Name: NF16662_low_21
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 158 - 394
Target Start/End: Original strand, 6629525 - 6629761
Alignment:
| Q |
158 |
ctgtgggagtagaaaattgaagaaattcgtttaaaaaccatcttcaattccttttctcttaagactttcgtnnnnnnnnnnnnnnntattttttaacaac |
257 |
Q |
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| T |
6629525 |
ctgtgggagtagaaaattgaagaaattcgtttaaaaaccatcttcaattccttttctcttaagactttcgtaaaaaaaataaaaaatattttttaacaac |
6629624 |
T |
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| Q |
258 |
aaaataagatattactgttaaatcaaatgcaagaataagaactactaaacccaacaactgagtcgaagtacatgcagtactaaacccacgaaaaattagc |
357 |
Q |
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| T |
6629625 |
aaaataagatattattgttaaatcagatgtaagaataagaactactaaacccaacaacttagtcgaagtacatgtagtactaaacccacgaaaaattagc |
6629724 |
T |
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| Q |
358 |
accaagaaaacctgaccaaagggaagtaggaaagtca |
394 |
Q |
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| T |
6629725 |
accaagaaaacctaaccaaagggaagtaggaaagtca |
6629761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 6803214 - 6803319
Alignment:
| Q |
294 |
aagaactactaaacccaacaactgagtcgaagtacatgcagtactaaacccacgaaaaattagcaccaagaaaacctgacc--aaagggaagtaggaaag |
391 |
Q |
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|||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
6803214 |
aagaaccactaaacccaacaattgagtcgaagtgcatgtagtactaaacccacgaaaaattagcaccaagaaaacctaaccaaaaagggaagtaggaaag |
6803313 |
T |
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| Q |
392 |
tcaaaa |
397 |
Q |
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|||||| |
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| T |
6803314 |
tcaaaa |
6803319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 6629370 - 6629430
Alignment:
| Q |
2 |
ggatatagacgggcacgaattcccgtctcaatgctaattaatgtacattattaccaaaatg |
62 |
Q |
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| T |
6629370 |
ggatatagacgggcacgaattcccgtctcaatgctaattaatgtacattattaccaaaatg |
6629430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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