View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_23 (Length: 382)
Name: NF16662_low_23
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_23 |
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| [»] scaffold0446 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0446 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 9781 - 10145
Alignment:
| Q |
18 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctatccctgtacaaaaatttatattagctagataagtaagatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9781 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctctccctgtacaaaaatttatattggctagataagtaagatt |
9880 |
T |
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| Q |
118 |
aatgatcaagctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcct |
217 |
Q |
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| T |
9881 |
aatgatcaagctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcct |
9980 |
T |
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| Q |
218 |
agaacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcaatgtcctgagagctaaaaaatcagcacatcatatcatacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9981 |
agaacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactgtcctgagagctaaaaaatcagcacatcatatcatacca |
10080 |
T |
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| Q |
318 |
ataaactcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattcc |
382 |
Q |
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| T |
10081 |
aaaaactcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattcc |
10145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 56110917 - 56111281
Alignment:
| Q |
18 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctatccctgtacaaaaatttatattagctagataagtaagatt |
117 |
Q |
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| T |
56110917 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctctccctgtacaaaaatttatattagctagataagtaagatt |
56111016 |
T |
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| Q |
118 |
aatgatcaagctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcct |
217 |
Q |
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| T |
56111017 |
aatgatcaagctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcct |
56111116 |
T |
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| Q |
218 |
agaacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcaatgtcctgagagctaaaaaatcagcacatcatatcatacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
56111117 |
agaacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactatcctgagagctaaaaaatcagcacatcatatcatacca |
56111216 |
T |
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| Q |
318 |
ataaactcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattcc |
382 |
Q |
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| T |
56111217 |
aaaaactcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattcc |
56111281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 26016684 - 26016950
Alignment:
| Q |
18 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctatccctgtacaaaaatttatattagctagataagtaagatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26016684 |
cttcataaaccaatacattaatcctccaaaagcaaagatagcaatacttatgagattctctccctgtacaaaaatttatattagctagataagtaagatt |
26016783 |
T |
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| Q |
118 |
aatgatcaagctgttgctatcagtccacctaataacttaaaatcctttagtaatatctccacaaacttaagataaaattcaatcacaaacttaagagcct |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26016784 |
aatgatcaagctgttgctatcagtccatctaataactcaaactcctctagtaacatctccacaaacttaagataaaattcaatcacaaacttgagagcct |
26016883 |
T |
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| Q |
218 |
ag-aacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcaatgtcct |
283 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26016884 |
agcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct |
26016950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 26156241 - 26156323
Alignment:
| Q |
202 |
acaaacttaagagcctag-aacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcaatgtcct |
283 |
Q |
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| T |
26156241 |
acaaacttgagagcctagcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct |
26156323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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