View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_27 (Length: 356)
Name: NF16662_low_27
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 6944633 - 6944965
Alignment:
| Q |
8 |
tagcataggttttagctgatttgacttactaagaaagaacatctgcaagggttatgatcattgatcaactatgtttaccaacatctatcacatttctctg |
107 |
Q |
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| T |
6944633 |
tagcataggttttagctaatttgacttactaagaaagaatatctgcaagagttatgatcattgatcaactatgtttaccaacatctatcacatttctctg |
6944732 |
T |
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| Q |
108 |
agattactgnnnnnnnattatttaatagttgttcttccttactgtttttcaattatttaatagttgttttcatgtagaaatgcaacaaaagatgtctttc |
207 |
Q |
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| T |
6944733 |
agattactgtttttttattatttaatagttgttcttccttactgtttttcaattatttaatagttgttttcatgtagaaatgcaacaaaagatgtctttc |
6944832 |
T |
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| Q |
208 |
tgtattaaaaacaaaacaaattctagaaaatgtggttttaggagtttgattactattgtgatttgtgagaaacatatatggatgatagattacattgagt |
307 |
Q |
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| T |
6944833 |
tgtattaaaaacaaaacaaattctagaaaatgtggttttaggagtttgattactattgtgacttgtgagaaacatatatggatgatagattacattgagt |
6944932 |
T |
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| Q |
308 |
aaactaaagaggaaaagaatatcatataggatc |
340 |
Q |
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| T |
6944933 |
aaactaaagaggaaaagaatatcatataggatc |
6944965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 338
Target Start/End: Complemental strand, 7474494 - 7474307
Alignment:
| Q |
146 |
ttactgtttttcaattatttaatagttgttttcatgtagaaatgcaacaaaagatgtctttct--gtattaaaaacaaaacaaattctagaaaatgtggt |
243 |
Q |
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| T |
7474494 |
ttactgtctttggattatttgatagttgtttgcatgtagcaatacaacaaaagatgcctttatatgtgttaaaaacaaaacaaaatctagataaagtggt |
7474395 |
T |
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| Q |
244 |
tttaggagtttgattactattgtgatttgtgagaaacatatatggatgatagattacattgagtaaactaaagaggaaaagaatatcatatagga |
338 |
Q |
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| T |
7474394 |
tttaggagtttgagtacta-------ttttgagaaacatatatgaatgagagtttagattgaggaagttgaagaggaaaaagatatcatatagga |
7474307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 7474597 - 7474499
Alignment:
| Q |
10 |
gcataggttttagctgatttgacttactaagaaagaacatctgcaagggttatgatcattgatcaactatgtttaccaac---atctatcacatttctct |
106 |
Q |
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| T |
7474597 |
gcatatgttttagctaatt-gtcttattaagaaagaacatttgcaagagttgtgatcattgatcaattatgtttacctaccagatctttcacatttctct |
7474499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 7485267 - 7485219
Alignment:
| Q |
58 |
gttatgatcattgatcaactatgtttaccaacatctatcacatttctct |
106 |
Q |
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| T |
7485267 |
gttatgataattgatcaattatctttaccaacatctatcaaatttctct |
7485219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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