View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_29 (Length: 328)
Name: NF16662_low_29
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 47101317 - 47101017
Alignment:
| Q |
18 |
atttcccaataacacaaactcctgaaggtgatccaaaaagcattacaagtaatgagaacaaaccttcaacttcaaaggatctagaagaaattttacatgc |
117 |
Q |
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| T |
47101317 |
atttcccaataacacaaacttctgaaggtgatccaaaaagcattacaagtaatgagaacaaaccttcaacttcaaaggatctagaagaaattttacatgc |
47101218 |
T |
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| Q |
118 |
aaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggcttgacacagagaactctcacattggtgtgtggcaaaagcgtgctggg |
217 |
Q |
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| T |
47101217 |
aaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggcttgacacagagaactctcacattggtgtgtggcaaaagcgtgctggg |
47101118 |
T |
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| Q |
218 |
aagtgttctgaatcaaattgggttatgactgttcagcttggcaaaaagatgagtgtaacccaagatagtggtagtagcagtagtagtgtggcaccttcat |
317 |
Q |
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| T |
47101117 |
aagtgttctgaatcaaattgggttatgactgttcagcttgggaaaaagatgagtgtaacccaagatagtggtagtagcagtagtagtgtggcaccttcat |
47101018 |
T |
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| Q |
318 |
c |
318 |
Q |
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| T |
47101017 |
c |
47101017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 2428534 - 2428445
Alignment:
| Q |
115 |
tgcaaaacttcgaaaatgtagcaaggtaccatctccttccatgacttgtttaaggcttgacacagagaactctcacattggtgtgtggca |
204 |
Q |
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|||||||||| |||||||| ||||| ||| || |||||| | |||||| ||||||||||||| ||||| || ||| |||| |||||||| |
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| T |
2428534 |
tgcaaaacttagaaaatgttgcaagtcaccttcaccttccctcacttgtctaaggcttgacactgagaattcacactttggagtgtggca |
2428445 |
T |
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