View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_30 (Length: 325)
Name: NF16662_low_30
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 51717356 - 51717060
Alignment:
| Q |
18 |
caaccaagaacttggcatcatcgccaaatacctgactcctttgctcaaattcttcagccagccgacttataacgctcaaaccagcactcatagatcttgt |
117 |
Q |
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| T |
51717356 |
caaccaagaacttggcatcatcgccaaatacttgactcctttgctcaaattcttcagccagccgacttataacgctcaaaccagcactcatagatcttgt |
51717257 |
T |
|
| Q |
118 |
tccactgctttcttggcgcctgtgattatttcccatatcccagctgtattccttgtcatcgcttgcattaacagaagcatctgaattcctttcagaatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51717256 |
tccactgctttcttggcgcctgtgattatttcccatatcccagctgtattccttgtcatcgcttgcattaacagaagcatctgaattcctttcagaatca |
51717157 |
T |
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| Q |
218 |
tccatagcaaggctcttctttgcaatggagagactagattgtaaggatctcatttgtttctgccatacttcttccatggatttcatttttagttcat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51717156 |
tccatagcaaggctcttctttgcaatggagagactagattgtaaggatctcatttgtttctgccatacttcttccatggatttcatttttagttcat |
51717060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 14311464 - 14311176
Alignment:
| Q |
18 |
caaccaagaacttggcatcatcgccaaatacctgactcctttgctcaaattcttcagccagccgacttataacgctcaaaccagcactcatagatcttgt |
117 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| | |||||||| |
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| T |
14311464 |
caactaagaacttggcatcatcaccaaatacttgactcctttgctcaaattcttcagcaagccgacttataacactcaaactagcactcgttgatcttgt |
14311365 |
T |
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| Q |
118 |
tccactgctttcttggcgcctgtgattatttcccatatcccagctgtattccttgtcatcgcttgc---attaacagaagcatctgaattcctttcagaa |
214 |
Q |
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| T |
14311364 |
tccgttgctttcttggcgcctgtgattacttcccgcatcccagctgtaatcacgctcatcacttgcattattaacagatgcatctgaatttctgtcagag |
14311265 |
T |
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| Q |
215 |
tcatccatagcaaggctcttctttgcaatggagagactagattgtaaggatctcatttgtttctgccatacttcttccatggatttcat |
303 |
Q |
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| T |
14311264 |
tcatcaatagcaaggctcttcttagcaatggagaggctagattgaagtgatctcatttgtttctgccacacgtcttccatggatttcat |
14311176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 7589734 - 7590021
Alignment:
| Q |
18 |
caaccaagaacttggca-tcatcgccaaatacctgactcctttgctcaaattcttcagccagccgacttataacgctcaaaccagcactcatagatcttg |
116 |
Q |
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||||||||||||||||| || || |||||||| |||||||||||| |||| ||||||| |||||||||||||| ||||||| |||| || | || |||| |
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| T |
7589734 |
caaccaagaacttggcaatcgtcaccaaatacttgactcctttgc--aaatgcttcagcaagccgacttataacactcaaactagcagtcgttgaccttg |
7589831 |
T |
|
| Q |
117 |
ttccactgctttcttggcgcctgtgattatttcccatatcccagctgtattccttgtcatcgcttgc---attaacagaagcatctgaattcctttcaga |
213 |
Q |
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|||| |||||||||||| |||||||||| |||||| ||||||||||| || ||||| ||||| ||||||||| ||||||||||| || ||||| |
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| T |
7589832 |
ttccgttgctttcttggctcctgtgattacttcccacctcccagctgtaatcacgctcatcacttgcattattaacagatgcatctgaatttctgtcaga |
7589931 |
T |
|
| Q |
214 |
atcatccatagcaaggctcttctttgcaatggagagactagattgtaaggatctcatttgtttctgccatacttcttccatggatttcat |
303 |
Q |
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||||| ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||| |||| | ||||||||||||||||| |
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| T |
7589932 |
gtcatcaatagcaaggctcttcttagcaatggagaggctagattgaagtgatctcatttgtttcagccacaagtcttccatggatttcat |
7590021 |
T |
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