View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_31 (Length: 324)

Name: NF16662_low_31
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_31
NF16662_low_31
[»] chr7 (1 HSPs)
chr7 (12-305)||(450041-450332)
[»] chr3 (15 HSPs)
chr3 (74-233)||(9329809-9329968)
chr3 (75-233)||(9336513-9336671)
chr3 (12-151)||(9395314-9395453)
chr3 (90-205)||(41985629-41985744)
chr3 (89-152)||(9695615-9695678)
chr3 (90-205)||(9343846-9343961)
chr3 (90-165)||(41980895-41980970)
chr3 (88-136)||(9756450-9756498)
chr3 (90-129)||(9485969-9486008)
chr3 (90-129)||(13864281-13864320)
chr3 (182-235)||(16011774-16011827)
chr3 (182-236)||(9412978-9413032)
chr3 (90-136)||(9686753-9686799)
chr3 (82-147)||(16011695-16011760)
chr3 (89-137)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (82-165)||(7025797-7025880)
chr6 (89-165)||(7012861-7012937)
chr6 (81-205)||(7041497-7041621)
chr6 (82-165)||(7029854-7029937)
chr6 (90-165)||(7046880-7046955)
chr6 (81-165)||(9170858-9170942)
chr6 (81-165)||(9159486-9159570)
[»] chr5 (2 HSPs)
chr5 (87-154)||(18571163-18571230)
chr5 (81-205)||(33541653-33541777)
[»] chr8 (1 HSPs)
chr8 (90-147)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 450041 - 450332
Alignment:
Q  12 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  450041 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgac--------tgtatggattgatgtgtttaggcttgatga 450132  T
Q  112 gaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttct------gcttctgcttcggatttg 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  450133 gaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgcttctgcttctgcttcggatttg 450232  T
Q  206 ggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccacggtcttagttgcatggaccgtaatatgagtgtttttcacttggatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  450233 ggtttaacaaatgggaatggtgtgatctttactacagattattttgcctcccgcggtcttagttgcatggaccgtaatatgagtgtttttcacttggatc 450332  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 9329968 - 9329809
Alignment:
Q  74 cgtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatc 173  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||   |||||||||| ||  ||     
T  9329968 cgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatg 9329869  T
Q  174 tgtattccttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatct 233  Q
      ||||| ||||||||||||||||| || ||||||||  | ||||||||| |||| ||||    
T  9329868 gatattcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9329809  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 9336671 - 9336513
Alignment:
Q  75 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatct 174  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||   |||||||||| ||  ||      
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatgg 9336572  T
Q  175 gtattccttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatct 233  Q
     | ||| ||||||||||||||||| || ||||||||  | ||||||||| |||| ||||    
T  9336571 atgttcgttttctgcttctgcttccgagttgggttttgccaatgggaattgtgtcatct 9336513  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 9395453 - 9395314
Alignment:
Q  12 aattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatga 111  Q
    |||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| |||||||||||||||||||||||||    
T  9395453 aattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatga 9395354  T
Q  112 gaaggagaaaaagtgggtcaagttgacgaatttaggagat 151  Q
    |||| ||||||||||||| |||||||| ||||||||||||    
T  9395353 gaagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 41985744 - 41985629
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 189  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  190 ttctgcttcggatttg 205  Q
    ||||||||||||||||    
T  41985644 ttctgcttcggatttg 41985629  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 152  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 9343961 - 9343846
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 189  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||   |||||||||| ||  ||   | ||| ||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  190 ttctgcttcggatttg 205  Q
    ||||||||||||||||    
T  9343861 ttctgcttcggatttg 9343846  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 41980970 - 41980895
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttctt 41980895  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  88 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 136  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 129  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 129  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 16011774 - 16011827
Alignment:
Q  182 ttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatcttt 235  Q
    ||||||||||||||||||||||||||| || | ||||||||| |||| ||||||    
T  16011774 ttttctgcttctgcttcggatttgggtgtagcgaatgggaattgtgtaatcttt 16011827  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 9413032 - 9412978
Alignment:
Q  182 ttttctgcttctgcttcggatttgggtttaacaaatgggaatggtgtgatcttta 236  Q
    ||||||| ||| ||||||||||||||||| | |||||||||| ||||||| ||||    
T  9413032 ttttctgtttccgcttcggatttgggtttgagaaatgggaattgtgtgatattta 9412978  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 136  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 147  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 137  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7025880 - 7025797
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||   ||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 7012937 - 7012861
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||  |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 7012861  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 7041621 - 7041497
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 180  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||   |||||||||| || ||  | | |||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  181 cttttctgcttctgcttcggatttg 205  Q
     || |||| ||||||||||||||||    
T  7041521 gttctctgtttctgcttcggatttg 7041497  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7029937 - 7029854
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| ||| || ||||   ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 7046955 - 7046880
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| |||| | ||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttctt 7046880  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 9170942 - 9170858
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 9159486 - 9159570
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||||| |||||| |||| | ||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9159486 ctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  87 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 154  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 33541777 - 33541653
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 180  Q
    ||||| ||||| || |||||| |||| ||||||||||||   ||||||| ||||| | || |||||||||||   ||||||||||||| | |   | |||    
T  33541777 ctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttc 33541678  T
Q  181 cttttctgcttctgcttcggatttg 205  Q
    ||||||||| |||||||| ||||||    
T  33541677 cttttctgcatctgcttctgatttg 33541653  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 147  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

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