View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_33 (Length: 316)
Name: NF16662_low_33
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 63 - 300
Target Start/End: Complemental strand, 24627657 - 24627421
Alignment:
| Q |
63 |
gattattctaacttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacactaannnnnnnggaccagtatgt |
162 |
Q |
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| T |
24627657 |
gattattctaacttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacactaatttttttggaccagtatgt |
24627558 |
T |
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| Q |
163 |
gtcacattttctgcctgcaacattatttccaaaatcatatctttagaatatcttaataaagatttcaaactttatagtaagattttgaannnnnnnggtt |
262 |
Q |
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| T |
24627557 |
gtcacattttctgcctgcaacattatttccaaaatcatatctttagaatatc-taataaagatttcaaactttatagtaagattttgaatttttttggtt |
24627459 |
T |
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| Q |
263 |
agttaatttacctggccatgaacgattgatgctatagt |
300 |
Q |
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| T |
24627458 |
agttaatttacctggccatgaacgattgatgctatagt |
24627421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 4534063 - 4533994
Alignment:
| Q |
73 |
acttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacacta |
142 |
Q |
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| T |
4534063 |
acttacactgtcacagcatgtccaccgaatgtgtagagtatgttagtggctccagtgaagtacagcacta |
4533994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 32803617 - 32803674
Alignment:
| Q |
77 |
acactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagta |
134 |
Q |
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| T |
32803617 |
acactgtaacagcatgtccaccaaaggtatagagaatgttggtagctccggtgaagta |
32803674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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