View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_35 (Length: 295)
Name: NF16662_low_35
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 41841604 - 41841887
Alignment:
| Q |
1 |
aatcatcagaataaataccaacattacctacaatgaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagtttcacccaaaa |
100 |
Q |
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| T |
41841604 |
aatcgtcagaataaataccaacattacctacaatgaaaccacaagttatttctgagacgatgtgtatatcaaaatcatttgacatcagtttcacccaaaa |
41841703 |
T |
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| Q |
101 |
acacatatactagtaaaattaacttgtaattactccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcataaactaaa |
200 |
Q |
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| T |
41841704 |
acacatatactagtaaaattaacatgtaattactccaaagaacataggctaaaaagtgtgcatgtagacggcaatacatatacagttagcataaactaaa |
41841803 |
T |
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| Q |
201 |
accaactttccctgaaatcctacaaaatgttatgcatatatatgtatgatacatatacagttacagcaatgcataatacttcat |
284 |
Q |
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| T |
41841804 |
atcaactttccctgaaatcctacaaaatgttatgtatatgtatgtatgatacatatacagttacagcaatgcataatacttcat |
41841887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 41841508 - 41841549
Alignment:
| Q |
170 |
ggcaatacatatacagttagcataaactaaaaccaactttcc |
211 |
Q |
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| T |
41841508 |
ggcaatacatatacagttagcataaactaaaatcaactttcc |
41841549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 3461749 - 3461833
Alignment:
| Q |
108 |
tactagtaaaattaacttgtaattactccaaagaacataggctaaaaagcgtgcatgtagacggcaatacatatacagttagcat |
192 |
Q |
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| T |
3461749 |
tactagtaaaattatcatgtaattactccaaagaacataggctaaaaagtgtgtatgtagacagcaatacatatacagtttgcat |
3461833 |
T |
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