View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_36 (Length: 289)
Name: NF16662_low_36
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 13747312 - 13747148
Alignment:
| Q |
13 |
gaaagtggagacctaagacagtcagaaactcaagccagggttcctctcaggacatttatctttggtgtgaaaccaaagaaacaatccatattctcctaca |
112 |
Q |
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| T |
13747312 |
gaaagtggagacctaagacagtcagaaactaaagccagggttcctctcaggacatttatctttggtgtgaaaccaaagaaacaatccatattctcctata |
13747213 |
T |
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| Q |
113 |
tgacccctcgaatgcataggaagttcaactctgcctctgccagggatcagaatcgtttgtagaat |
177 |
Q |
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| T |
13747212 |
tgacccctcgaatgcataggaagttcaactctgcctctgccagggatcagagtcgtttgtagaat |
13747148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 13747087 - 13747058
Alignment:
| Q |
238 |
atagtttcattaggtagtggattgagagtg |
267 |
Q |
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| T |
13747087 |
atagtttcattaggtagtggattgagagtg |
13747058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 28751321 - 28751277
Alignment:
| Q |
52 |
gttcctctcaggacatttatctttggtgtgaaaccaaagaaacaa |
96 |
Q |
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| T |
28751321 |
gttcctctaaggtcatttatctttggagtcaaaccaaagaaacaa |
28751277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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