View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_39 (Length: 267)

Name: NF16662_low_39
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_39
NF16662_low_39
[»] chr8 (3 HSPs)
chr8 (15-189)||(32639135-32639309)
chr8 (184-249)||(32639018-32639083)
chr8 (76-133)||(11567810-11567867)
[»] chr1 (3 HSPs)
chr1 (83-186)||(5086028-5086131)
chr1 (68-138)||(29086792-29086862)
chr1 (68-137)||(49191663-49191732)
[»] chr4 (3 HSPs)
chr4 (83-167)||(42784773-42784857)
chr4 (99-184)||(14013842-14013927)
chr4 (67-167)||(49984439-49984538)
[»] chr6 (1 HSPs)
chr6 (67-186)||(34428059-34428178)
[»] chr3 (1 HSPs)
chr3 (68-151)||(53798248-53798330)
[»] chr2 (2 HSPs)
chr2 (75-165)||(33643546-33643636)
chr2 (78-137)||(33719047-33719106)
[»] chr5 (1 HSPs)
chr5 (97-186)||(32810900-32810989)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 32639309 - 32639135
Alignment:
Q  15 agcatagggatcagctggtagatgacagtgattttgaaggagagaatgttcggcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639309 agcatagggatcagctggtagatgacagtgattttgaaggagagaatgttcggcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaa 32639210  T
Q  115 atttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatctttt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639209 atttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatctttt 32639135  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 32639083 - 32639018
Alignment:
Q  184 tcttttgctgcatcgtgacaaatggactagattaattgatgttgttcaatttaaaggactaaattg 249  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  32639083 tcttttgctgcatcgtgacaaatggactagattgattgatgttgatcaatttaaaggactaaattg 32639018  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 11567867 - 11567810
Alignment:
Q  76 tcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaatt 133  Q
    ||||| ||| ||||||||| | ||||||||||  |||||||||||||||||| |||||    
T  11567867 tcctcggaaatgtaatggttgggcaatttagtccctcaaatttacgaaatagcaaatt 11567810  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 5086131 - 5086028
Alignment:
Q  83 aattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaat 182  Q
    ||||||||| ||| || ||||||||  ||||||||||| |||||| |||||||||| ||||| |||||||  || ||||||||||  | || ||||||||    
T  5086131 aattgtaattgtcaagaaatttagtccctcaaatttacaaaatagcaaattagtcctttaaattaaagaatatcaatcaatttagttattcaatcaaaat 5086032  T
Q  183 atct 186  Q
    ||||    
T  5086031 atct 5086028  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 29086862 - 29086792
Alignment:
Q  68 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtcc 138  Q
    |||| ||||||||| |||||||||| ||||||||||||||  ||  ||||||| |||||| ||| ||||||    
T  29086862 cattccggtcctcaaaattgtaatgatcgagcaatttagtcccttcaatttacaaaatagaaaactagtcc 29086792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 49191663 - 49191732
Alignment:
Q  68 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtc 137  Q
    ||||||||| |||| ||||||||| | ||||||||| |||  || ||||||||||||||| ||| |||||    
T  49191663 catttcggttctcaaaattgtaatagccgagcaattcagtccctaaaatttacgaaataggaaaatagtc 49191732  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 42784773 - 42784857
Alignment:
Q  83 aattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttag 167  Q
    |||||| |||||||| |||||||||| || ||||||||||||||| |||||||||| | ||  ||||||| ||| || |||||||    
T  42784773 aattgtgatggtcgatcaatttagttcctgaaatttacgaaatagcaaattagtccctcaagttaaagaaattcaattaatttag 42784857  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 14013842 - 14013927
Alignment:
Q  99 caatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatat 184  Q
    |||||||||  |||||||||| ||||||| ||| || ||| ||||| ||||||||  | |||||||||| | ||||||||||||||    
T  14013842 caatttagtccctcaaatttatgaaatagcaaaataatcccttaaattaaagaacaccaatcaatttagtccctctatcaaaatat 14013927  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 49984538 - 49984439
Alignment:
Q  67 gcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattta 166  Q
    ||||||| ||||||| ||||  |||||||||  |||| ||  ||||||||||||||||  ||||||| |||| || || |||||||| || |||||||||    
T  49984538 gcatttcagtcctcaaaattagaatggtcgactaattcagagtctcaaatttacgaaactgtaaattggtcc-tttaattaaagaacatcaatcaattta 49984440  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 34428059 - 34428178
Alignment:
Q  67 gcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattta 166  Q
    |||||| |||||||| |||||| | |||||  ||||||| |  |||||||||| || |||| |||||| ||| ||||| |||||| | || |||||||||    
T  34428059 gcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaattta 34428158  T
Q  167 gccactctatcaaaatatct 186  Q
    | | ||| ||||||||||||    
T  34428159 gtccctccatcaaaatatct 34428178  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 53798248 - 53798330
Alignment:
Q  68 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaaga 151  Q
    ||||||| |||||  ||||||||||||||  ||||||||| || | |||||||||||||| |||||||||| ||||| ||||||    
T  53798248 catttcgatcctcgaaattgtaatggtcggtcaatttagtctc-ctaatttacgaaataggaaattagtcctttaaattaaaga 53798330  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 33643546 - 33643636
Alignment:
Q  75 gtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattt 165  Q
    ||||||| |||||||| | |||||||||||| |  ||||| |||||||||||| ||| |||||| | ||| |||||||| || ||||||||    
T  33643546 gtcctcaaaattgtaaggctcgagcaatttactcgctcaagtttacgaaatagcaaagtagtccctcaaattaaagaacgtcaatcaattt 33643636  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 33719106 - 33719047
Alignment:
Q  78 ctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtc 137  Q
    |||| |||||||| ||||||||||||||||  ||||||| |||||||||| ||| |||||    
T  33719106 ctcaaaattgtaagggtcgagcaatttagtcactcaaatatacgaaatagcaaactagtc 33719047  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 32810900 - 32810989
Alignment:
Q  97 agcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatct 186  Q
    |||||||||||  |||||||||||||||||| ||||||| |  | |||  ||||||| || ||||||||||   ||| ||||||||||||    
T  32810900 agcaatttagtccctcaaatttacgaaatagcaaattaggctctgaaataaaagaacgtcaatcaatttagttcctcaatcaaaatatct 32810989  T

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