View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_4 (Length: 659)
Name: NF16662_low_4
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 293 - 642
Target Start/End: Original strand, 7468793 - 7469155
Alignment:
| Q |
293 |
aatcacccttcattttgggtttat----tcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatggtta |
388 |
Q |
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| T |
7468793 |
aatcacccttcattttgggtttatatattcagcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagatattgagtgtccaatggtta |
7468892 |
T |
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| Q |
389 |
aacaattggtgcaaaacttaggtgatctatcataaacaatgtcaacacagaacgcaaagccctcaagttcaaccaccacctcttcaaaaattctcttgga |
488 |
Q |
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| T |
7468893 |
aacaattggtgcaaaacttaggtaatctatcataaacaatgtcaacacagaacgcaaagccctcaagttcaaccaccacctcttcaaaaattctcttgga |
7468992 |
T |
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| Q |
489 |
taggttgatgttgacaagaatgcacacatagcagccgaaagctcgcttctttattgcatc----------aggtgagtatcgaccccacttgttaagaaa |
578 |
Q |
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| T |
7468993 |
taggttgatgttgactagaatgcacacatagcggccaaaagctcgcttctttattgcatcatcaatcaagaggcgagtaccgaccccacttgttaagaaa |
7469092 |
T |
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| Q |
579 |
gtgtttgagtaaactcatatgttttactttaatattttgtagtttcataatt--taacatacataa |
642 |
Q |
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| T |
7469093 |
gcgtttgagtagactcacatattttactt---tattttgtagtttcatagtttataacatacataa |
7469155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 561 - 632
Target Start/End: Complemental strand, 1331120 - 1331049
Alignment:
| Q |
561 |
accccacttgttaagaaagtgtttgagtaaactcatatgttttactttaatattttgtagtttcataattta |
632 |
Q |
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| T |
1331120 |
accccacttattaagaaagtgtttgagtagactcacatgttttactttaatattttgtagtttcatagttta |
1331049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 549
Target Start/End: Complemental strand, 1331152 - 1331120
Alignment:
| Q |
517 |
tagcagccgaaagctcgcttctttattgcatca |
549 |
Q |
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| T |
1331152 |
tagcggccgaaagctcgcttctttattgcatca |
1331120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 435
Target Start/End: Original strand, 8304253 - 8304401
Alignment:
| Q |
287 |
tagaagaatcacccttcattttgggtttattcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatggt |
386 |
Q |
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| T |
8304253 |
tagaataatcacccttcaatttggctttatccggcttcaccctatcctcattgttctctgggtgcaatttgttgcgaagagaaactaagtgccctatgtt |
8304352 |
T |
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| Q |
387 |
taaacaattggtgcaaaacttaggtgatctatcataaacaatgtcaaca |
435 |
Q |
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| T |
8304353 |
gaaacaattggaacaaaactcatacaatctttcataaacaatgtaaaca |
8304401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 9455062 - 9455002
Alignment:
| Q |
131 |
cctcctcatggtggtcctcatgagatctaactttgtcgttatcttcctcctttgtattatc |
191 |
Q |
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| T |
9455062 |
cctcctcatggtggtcctcgtgagattaaacattatcgttatcttcctcctctgtcttatc |
9455002 |
T |
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