View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_low_5 (Length: 640)
Name: NF16662_low_5
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 36290247 - 36290871
Alignment:
| Q |
1 |
cctagaccgatgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttt |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290247 |
cctagaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttt |
36290346 |
T |
|
| Q |
101 |
tatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagttatatactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36290347 |
tatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcgagataatactttcttcaggagttatatactc |
36290446 |
T |
|
| Q |
201 |
cataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290447 |
cataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaaca |
36290546 |
T |
|
| Q |
301 |
ccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290547 |
ccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctt |
36290646 |
T |
|
| Q |
401 |
tttcatcagtgaaaactgttttgctattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggtactcttgtgca |
500 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36290647 |
tttcatcagtgaaaactgttttgccattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggtactctcgtgca |
36290746 |
T |
|
| Q |
501 |
gattccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36290747 |
gattccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctga |
36290846 |
T |
|
| Q |
601 |
attccttctttggcaatgttgagac |
625 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
36290847 |
attccttctttggcaatgttgagac |
36290871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 10 - 625
Target Start/End: Original strand, 36312739 - 36313354
Alignment:
| Q |
10 |
atgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaacca |
109 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
36312739 |
atgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaacca |
36312838 |
T |
|
| Q |
110 |
tttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagttatatactccataataat |
209 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||||| |
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|
| T |
36312839 |
tctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataat |
36312938 |
T |
|
| Q |
210 |
atctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttc |
309 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||| || |||||| |
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|
| T |
36312939 |
atccttaatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttc |
36313038 |
T |
|
| Q |
310 |
ttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctttttcatcag |
409 |
Q |
| |
|
|| |||||||| |||| |||||||| |||||||||||||||| ||||||| || ||||||||| ||||||| |||||||| |||| | |||||||| |
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|
| T |
36313039 |
ttcacaatcaaagtcagtggagtgtttgaaatccctttggcagttccagcaagctcttcagtagctgtgtttatagcatcagagacatttgcttcatcag |
36313138 |
T |
|
| Q |
410 |
tgaaaactgttttgctattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggtactcttgtgcagattccttg |
509 |
Q |
| |
|
| ||||| ||||| ||| | || || | || ||||| | || ||| ||| || || || | ||||| || ||||| ||||| || |||||||| |
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|
| T |
36313139 |
ttaaaacctgtttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttg |
36313238 |
T |
|
| Q |
510 |
tccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctgaattccttct |
609 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
36313239 |
tccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctct |
36313338 |
T |
|
| Q |
610 |
ttggcaatgttgagac |
625 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
36313339 |
ttggcaatgttgagac |
36313354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 33579675 - 33579845
Alignment:
| Q |
15 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
114 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||||||||||||||||| ||| | |
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|
| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaaccagttttatcaacagtttct |
33579774 |
T |
|
| Q |
115 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
185 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
33579775 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 33579866 - 33579949
Alignment:
| Q |
169 |
aagataatactttcttcaggagttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
252 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
33579866 |
aagataatgctttcttccataggtataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
33579949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 15997323 - 15997153
Alignment:
| Q |
15 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
114 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||| ||||||||||||| ||| | |
|
|
| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaatcagttttatcaacagtttct |
15997224 |
T |
|
| Q |
115 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
185 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
15997223 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 15997118 - 15997057
Alignment:
| Q |
191 |
ttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
252 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
15997118 |
ttataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
15997057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 30575823 - 30575787
Alignment:
| Q |
15 |
aacatcatcagcagtaaccttctccaacaatccttca |
51 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
30575823 |
aacatcatcagcagtaactttctcaaacaatccttca |
30575787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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