View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_low_6 (Length: 595)

Name: NF16662_low_6
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_low_6
NF16662_low_6
[»] chr1 (9 HSPs)
chr1 (1-254)||(42287134-42287387)
chr1 (360-579)||(42287479-42287698)
chr1 (1-116)||(12804505-12804620)
chr1 (1-113)||(50788816-50788928)
chr1 (1-118)||(12774954-12775071)
chr1 (1-110)||(28496106-28496215)
chr1 (1-98)||(31644070-31644167)
chr1 (16-110)||(36989372-36989466)
chr1 (21-111)||(4160414-4160504)
[»] chr8 (2 HSPs)
chr8 (1-112)||(5788721-5788832)
chr8 (1-92)||(33186752-33186843)
[»] chr2 (3 HSPs)
chr2 (22-95)||(38895872-38895945)
chr2 (16-110)||(40040821-40040915)
chr2 (1-110)||(42898315-42898424)
[»] chr7 (2 HSPs)
chr7 (16-111)||(40749422-40749517)
chr7 (21-110)||(44150800-44150889)
[»] chr4 (2 HSPs)
chr4 (1-95)||(22085521-22085615)
chr4 (22-92)||(30518166-30518236)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 42287134 - 42287387
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287134 tgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 42287233  T
Q  101 tctctaggtaacaaacatcatctttatatttatatcttcacatcgatgttagtctaattatatttcataaatatgaattcatcactctatatacataata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287234 tctctaggtaacaaacatcatctttatatttatatcttcacatcgatgttagtctaattatatttcataaatatgaattcatcactctatatacataata 42287333  T
Q  201 tatgctacacttttgccaaatgttagggttatacttatatggtttggtattgaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287334 tatgctacacttttgccaaatgttagggttatacttatatggtttggtattgaa 42287387  T

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Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 360 - 579
Target Start/End: Original strand, 42287479 - 42287698
Alignment:
Q  360 catcattcgattgcaaggaaaatggtcataagtcataacaatctgaagttttgcaagaaagcaagtaaaatccaaccaaaccatagatcaaattcataga 459  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  42287479 catcattcaattgcaaggaaaatggtcataagtcataacaatctgaagttttgcaagaaagcaagtaaaatccaaccaaaccgtagatcaaactcataga 42287578  T
Q  460 ctccttatatatcgctctctttctttcctcttcgtattgagctctaatttatataaattgaagtactctttaaacttctttactaaggaaccttttacat 559  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42287579 ctccttatatatcgttctctttctttcctcttcgtattgagctctaatttatctaaattgaagtactctttaaacttctttactaaggaaccttttacat 42287678  T
Q  560 ataaaaaggtgtgtgtatat 579  Q
    ||||||||||||||||||||    
T  42287679 ataaaaaggtgtgtgtatat 42287698  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12804620 - 12804505
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    |||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||| ||||    
T  12804620 tgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcactctct 12804521  T
Q  101 tctctaggtaacaaac 116  Q
    |||| ||||| |||||    
T  12804520 tctcaaggtaccaaac 12804505  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 50788928 - 50788816
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||    
T  50788928 tgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctct 50788829  T
Q  101 tctctaggtaaca 113  Q
    |||| ||||||||    
T  50788828 tctccaggtaaca 50788816  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12774954 - 12775071
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    |||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||  || ||||||||||| |||||||| ||||    
T  12774954 tgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggcactctct 12775053  T
Q  101 tctctaggtaacaaacat 118  Q
    |||| |||||| ||||||    
T  12775054 tctccaggtaataaacat 12775071  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28496215 - 28496106
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    ||||||||||| || || |||||||| || ||||||||||||||||| ||| | || || |||||||| |||||||| | |||||| |||||||||||||    
T  28496215 tgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctct 28496116  T
Q  101 tctctaggta 110  Q
    |||| |||||    
T  28496115 tctcaaggta 28496106  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31644167 - 31644070
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccct 98  Q
    ||||| || ||||||||||  ||||||||||| |||||||||||||| || ||||| || ||||||||| ||||||||| |||||||||||| |||||    
T  31644167 tgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggtaccct 31644070  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 36989372 - 36989466
Alignment:
Q  16 aagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctcttctctaggta 110  Q
    |||||||||||||||||||||||||||||||| ||||| || |  |||||||| || ||||| | |||||| ||||| ||| |||| || |||||    
T  36989372 aagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggta 36989466  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 4160414 - 4160504
Alignment:
Q  21 atatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctcttctctaggtaa 111  Q
    |||||| ||||| || ||||||||||| ||||| || | |||||| |||| ||| ||||  ||||| ||||| ||||||||||| ||||||    
T  4160414 atatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaaccctcttctcaaggtaa 4160504  T

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Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5788832 - 5788721
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||| |||||||    
T  5788832 tgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtggaaccctct 5788733  T
Q  101 tctctaggtaac 112  Q
    |||| |||||||    
T  5788732 tctcaaggtaac 5788721  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 33186752 - 33186843
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtgg 92  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||| || |||||   ||||||| ||||||| |||| ||||||||||||    
T  33186752 tgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtgg 33186843  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 38895945 - 38895872
Alignment:
Q  22 tatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcac 95  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | |||||||||||||||    
T  38895945 tatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcac 38895872  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 40040821 - 40040915
Alignment:
Q  16 aagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctcttctctaggta 110  Q
    ||||||||||| ||||||||||||||||| || |||  ||||| |||||| |||| ||| || ||||||||||||||||| || ||||| |||||    
T  40040821 aagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatgtgattgtggcacactattctccaggta 40040915  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42898315 - 42898424
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctct 100  Q
    ||||| || ||||| ||||| ||||| |||||||| || |||||||| || || || || ||||| || |||||||| |||||||| ||||| |||||||    
T  42898315 tgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctct 42898414  T
Q  101 tctctaggta 110  Q
    |||| |||||    
T  42898415 tctcaaggta 42898424  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 40749422 - 40749517
Alignment:
Q  16 aagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctcttctctaggtaa 111  Q
    ||||||||||| || ||||||||||||||||| ||  |||| ||||||||||||||||||||||  ||||||||||| || |||||||| ||||||    
T  40749422 aagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaa 40749517  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 44150889 - 44150800
Alignment:
Q  21 atatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcaccctcttctctaggta 110  Q
    ||||||||||||||| |||||||| || ||    || |||||||||||||| ||||| | |||||||||||| ||| | || ||||||||    
T  44150889 atatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaatacaaatgtgattgtggaaccatattttctaggta 44150800  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22085615 - 22085521
Alignment:
Q  1 tgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcac 95  Q
    |||||||| || || ||||||||||| |||||||||||||||||||| |||   |||| |||||| |||||||| || | |||||||||||||||    
T  22085615 tgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac 22085521  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 30518236 - 30518166
Alignment:
Q  22 tatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtgg 92  Q
    ||||||||||| || ||||||||||| || || || || ||||||||||||||||| | |||||| |||||    
T  30518236 tatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtgg 30518166  T

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