View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16663_high_6 (Length: 289)

Name: NF16663_high_6
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16663_high_6
NF16663_high_6
[»] chr5 (25 HSPs)
chr5 (128-277)||(26716079-26716232)
chr5 (128-277)||(26985819-26985972)
chr5 (159-260)||(11685896-11685996)
chr5 (159-258)||(2436880-2436979)
chr5 (159-245)||(3966473-3966560)
chr5 (183-245)||(14674240-14674302)
chr5 (183-237)||(27144442-27144496)
chr5 (182-240)||(39698517-39698575)
chr5 (182-258)||(31084281-31084357)
chr5 (182-257)||(8419985-8420061)
chr5 (183-235)||(19579682-19579734)
chr5 (19-55)||(26716886-26716922)
chr5 (19-55)||(26986626-26986662)
chr5 (159-236)||(16203797-16203874)
chr5 (184-230)||(17123034-17123080)
chr5 (182-236)||(21191081-21191135)
chr5 (182-236)||(22423837-22423891)
chr5 (58-100)||(26716227-26716269)
chr5 (58-100)||(26985967-26986009)
chr5 (183-236)||(19552569-19552622)
chr5 (182-258)||(21576770-21576847)
chr5 (183-240)||(39205856-39205913)
chr5 (182-258)||(28588699-28588773)
chr5 (182-218)||(41091282-41091318)
chr5 (160-236)||(41995451-41995525)
[»] chr1 (34 HSPs)
chr1 (182-258)||(36878419-36878495)
chr1 (159-236)||(9709800-9709877)
chr1 (182-235)||(2896146-2896199)
chr1 (182-245)||(6427322-6427384)
chr1 (159-229)||(10572591-10572661)
chr1 (183-258)||(14359548-14359621)
chr1 (182-236)||(398790-398844)
chr1 (183-245)||(18556482-18556544)
chr1 (183-245)||(46348409-46348471)
chr1 (97-207)||(16164257-16164365)
chr1 (182-230)||(17831556-17831604)
chr1 (182-229)||(1262871-1262918)
chr1 (186-229)||(19562650-19562693)
chr1 (183-258)||(48450613-48450687)
chr1 (182-236)||(1486734-1486788)
chr1 (184-238)||(6415028-6415082)
chr1 (182-224)||(12443485-12443527)
chr1 (182-236)||(15641055-15641109)
chr1 (182-263)||(24577211-24577292)
chr1 (182-216)||(40181871-40181905)
chr1 (159-207)||(1864882-1864930)
chr1 (193-230)||(3490426-3490463)
chr1 (183-236)||(5927366-5927419)
chr1 (193-242)||(29144394-29144443)
chr1 (185-258)||(38075998-38076070)
chr1 (182-258)||(38078686-38078769)
chr1 (182-226)||(113289-113333)
chr1 (182-254)||(5898291-5898362)
chr1 (182-230)||(10475002-10475050)
chr1 (182-258)||(23636074-23636149)
chr1 (184-216)||(23653354-23653386)
chr1 (159-215)||(25452152-25452206)
chr1 (159-206)||(44482240-44482287)
chr1 (226-258)||(46348446-46348478)
[»] scaffold0103 (1 HSPs)
scaffold0103 (182-259)||(51768-51845)
[»] chr6 (33 HSPs)
chr6 (93-230)||(16766683-16766818)
chr6 (182-247)||(7723275-7723341)
chr6 (183-245)||(10842503-10842565)
chr6 (186-259)||(16833266-16833338)
chr6 (159-230)||(7265595-7265666)
chr6 (183-239)||(17841615-17841671)
chr6 (159-217)||(9025496-9025554)
chr6 (159-225)||(9629374-9629440)
chr6 (185-240)||(19147431-19147486)
chr6 (182-236)||(9027158-9027212)
chr6 (182-236)||(9658859-9658913)
chr6 (182-259)||(12696276-12696358)
chr6 (182-258)||(7801181-7801258)
chr6 (182-227)||(19040341-19040386)
chr6 (185-238)||(20371138-20371191)
chr6 (182-230)||(7996403-7996451)
chr6 (182-230)||(8022350-8022398)
chr6 (182-258)||(10770699-10770774)
chr6 (184-235)||(677818-677869)
chr6 (182-229)||(10339151-10339198)
chr6 (182-229)||(26562676-26562723)
chr6 (162-236)||(30866149-30866223)
chr6 (159-225)||(33001291-33001357)
chr6 (159-236)||(7086775-7086852)
chr6 (183-236)||(426540-426593)
chr6 (183-236)||(8805598-8805651)
chr6 (159-207)||(9617443-9617491)
chr6 (186-258)||(20370509-20370584)
chr6 (171-207)||(5462695-5462730)
chr6 (186-230)||(5732539-5732583)
chr6 (226-258)||(17841652-17841684)
chr6 (182-230)||(19044450-19044498)
chr6 (159-207)||(31579229-31579275)
[»] chr2 (19 HSPs)
chr2 (107-229)||(21782767-21782890)
chr2 (181-258)||(38117183-38117260)
chr2 (159-229)||(31284035-31284106)
chr2 (182-258)||(30404875-30404950)
chr2 (182-245)||(28677880-28677943)
chr2 (183-242)||(30527621-30527680)
chr2 (182-245)||(37558948-37559011)
chr2 (182-236)||(21616742-21616796)
chr2 (182-227)||(18420459-18420504)
chr2 (160-236)||(23718006-23718082)
chr2 (160-236)||(24105678-24105754)
chr2 (186-229)||(896198-896241)
chr2 (126-203)||(38355858-38355933)
chr2 (182-240)||(27084238-27084296)
chr2 (182-236)||(37411269-37411323)
chr2 (128-216)||(44860320-44860406)
chr2 (182-235)||(24894370-24894423)
chr2 (188-236)||(31727837-31727885)
chr2 (182-230)||(37419729-37419777)
[»] chr4 (14 HSPs)
chr4 (182-258)||(35723409-35723484)
chr4 (93-203)||(30982816-30982924)
chr4 (182-230)||(15029751-15029799)
chr4 (93-207)||(24613639-24613751)
chr4 (88-236)||(847931-848077)
chr4 (182-216)||(21873396-21873430)
chr4 (182-216)||(21929257-21929291)
chr4 (182-236)||(23293011-23293065)
chr4 (226-260)||(30298908-30298942)
chr4 (226-260)||(30327776-30327810)
chr4 (182-259)||(7012024-7012100)
chr4 (183-215)||(30103382-30103414)
chr4 (182-230)||(36635310-36635358)
chr4 (162-225)||(40613441-40613504)
[»] chr8 (20 HSPs)
chr8 (159-230)||(13844598-13844669)
chr8 (160-224)||(31236580-31236644)
chr8 (158-218)||(40332189-40332249)
chr8 (182-236)||(22651956-22652010)
chr8 (158-236)||(37283813-37283889)
chr8 (182-230)||(13436989-13437037)
chr8 (183-231)||(39954305-39954353)
chr8 (182-245)||(14134670-14134733)
chr8 (183-258)||(20873028-20873102)
chr8 (162-224)||(27213539-27213601)
chr8 (182-245)||(36450779-36450842)
chr8 (159-216)||(12606831-12606888)
chr8 (182-236)||(24362227-24362281)
chr8 (182-236)||(29510329-29510383)
chr8 (183-216)||(14731712-14731745)
chr8 (182-258)||(22595952-22596028)
chr8 (159-230)||(4786340-4786411)
chr8 (182-258)||(29775995-29776070)
chr8 (182-230)||(34897071-34897119)
chr8 (226-258)||(36450817-36450849)
[»] scaffold0003 (1 HSPs)
scaffold0003 (93-236)||(241574-241715)
[»] chr7 (26 HSPs)
chr7 (182-230)||(32308106-32308154)
chr7 (182-256)||(11722123-11722197)
chr7 (159-236)||(19206030-19206107)
chr7 (159-228)||(22602712-22602781)
chr7 (182-258)||(12289072-12289148)
chr7 (184-245)||(25791624-25791685)
chr7 (159-242)||(20549765-20549848)
chr7 (106-230)||(24339628-24339750)
chr7 (182-236)||(26733284-26733338)
chr7 (182-236)||(27945021-27945075)
chr7 (131-230)||(6630888-6630985)
chr7 (183-236)||(11061102-11061155)
chr7 (182-235)||(22868023-22868076)
chr7 (187-260)||(28401100-28401172)
chr7 (182-223)||(29787394-29787435)
chr7 (182-215)||(45056926-45056959)
chr7 (140-242)||(3520327-3520427)
chr7 (182-230)||(5409861-5409909)
chr7 (159-258)||(15902781-15902879)
chr7 (186-230)||(23191882-23191926)
chr7 (192-248)||(24105647-24105702)
chr7 (182-230)||(25481888-25481936)
chr7 (182-222)||(30731031-30731071)
chr7 (182-242)||(35861938-35861998)
chr7 (183-231)||(42720916-42720964)
chr7 (184-236)||(43249973-43250025)
[»] chr3 (24 HSPs)
chr3 (92-229)||(4987228-4987363)
chr3 (182-256)||(10954911-10954986)
chr3 (182-245)||(40052304-40052366)
chr3 (159-236)||(25093482-25093559)
chr3 (182-258)||(14979140-14979215)
chr3 (182-258)||(26508069-26508144)
chr3 (95-145)||(5407210-5407261)
chr3 (187-242)||(10318064-10318119)
chr3 (182-245)||(20503437-20503499)
chr3 (182-241)||(21720739-21720798)
chr3 (182-236)||(5441056-5441110)
chr3 (182-236)||(8383237-8383291)
chr3 (182-216)||(9624641-9624675)
chr3 (182-236)||(14829670-14829723)
chr3 (183-217)||(27277864-27277898)
chr3 (171-224)||(5407262-5407314)
chr3 (182-258)||(8789575-8789651)
chr3 (159-216)||(11251978-11252033)
chr3 (183-216)||(11313826-11313859)
chr3 (184-236)||(12674528-12674580)
chr3 (182-230)||(15544679-15544727)
chr3 (182-230)||(21479104-21479152)
chr3 (184-236)||(24205068-24205120)
chr3 (190-258)||(26492238-26492305)
[»] scaffold0306 (1 HSPs)
scaffold0306 (182-236)||(13380-13434)
[»] scaffold0152 (1 HSPs)
scaffold0152 (182-236)||(21893-21947)
[»] scaffold0004 (1 HSPs)
scaffold0004 (182-240)||(92783-92841)
[»] scaffold0008 (1 HSPs)
scaffold0008 (93-236)||(263310-263451)
[»] scaffold0223 (1 HSPs)
scaffold0223 (182-236)||(20152-20206)
[»] scaffold0123 (1 HSPs)
scaffold0123 (128-204)||(44498-44572)
[»] scaffold0020 (1 HSPs)
scaffold0020 (182-216)||(135337-135371)
[»] scaffold0019 (1 HSPs)
scaffold0019 (193-258)||(71681-71746)
[»] scaffold0085 (1 HSPs)
scaffold0085 (182-258)||(26351-26427)
[»] scaffold0018 (1 HSPs)
scaffold0018 (181-230)||(192273-192322)
[»] scaffold0044 (1 HSPs)
scaffold0044 (182-226)||(53170-53214)
[»] scaffold0036 (1 HSPs)
scaffold0036 (129-207)||(9721-9797)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-236)||(225295-225347)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 26716232 - 26716079
Alignment:
Q  128 ggacacgtgttgtgtctaacaccaacatgacacaccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagt 227  Q
    ||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |    
T  26716232 ggacacgtgttctgtctgacaccgacacgacacacggacacattaattacaatcgaattatgtgattttctcaaattattagcagtgtcggcatgtcaat 26716133  T
Q  228 gtc-----agtgtccgtgtccgtatcggtgcttcattgtgttacacatatgcttc 277  Q
    |||      |||||||||||||||||||||||||||| | |||||||||||||||    
T  26716132 gtctatgtcgtgtccgtgtccgtatcggtgcttcattat-ttacacatatgcttc 26716079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 26985972 - 26985819
Alignment:
Q  128 ggacacgtgttgtgtctaacaccaacatgacacaccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagt 227  Q
    ||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |    
T  26985972 ggacacgtgttctgtctgacaccgacacgacacacggacacattaattacaatcgaattatgtgattttctcaaattattagcagtgtcggcatgtcaat 26985873  T
Q  228 gtc-----agtgtccgtgtccgtatcggtgcttcattgtgttacacatatgcttc 277  Q
    |||      |||||||||||||||||||||||||||| | |||||||||||||||    
T  26985872 gtctatgtcgtgtccgtgtccgtatcggtgcttcattat-ttacacatatgcttc 26985819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 11685996 - 11685896
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttca 257  Q
    |||||||||||| |||||||| |  ||||||| || |||||||||||||| || ||||| || |||||||||| ||||||||||||||||| ||||||||    
T  11685996 acaccgacacatataattacacta-aattatgcgactttctcaaattattagcggtgtcggcatgtcagtgtc-gtgtccgtgtccgtatccgtgcttca 11685899  T
Q  258 ttg 260  Q
    |||    
T  11685898 ttg 11685896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 2436979 - 2436880
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttc 256  Q
    |||||||||||| |||| |||| ||||||||||||||||  ||||||||| || ||||| ||||||||||||| |||||| ||||||||||| |||||||    
T  2436979 acaccgacacatataatcacaa-cgaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttc 2436882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 3966560 - 3966473
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt-cagtgtccgtgtccgt 245  Q
    |||||||||||| |||||||| | ||||| |||||||||||||||||||| || ||||| || ||||||||| ||||||||||||||||    
T  3966560 acaccgacacatataattacact-gaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtccagtgtccgtgtccgt 3966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 14674302 - 14674240
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||||| ||||| || |||||    
T  14674302 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgt 14674240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 27144496 - 27144442
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc 237  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||    
T  27144496 aattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtgtcc 27144442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 39698575 - 39698517
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtg 240  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| || ||||||    
T  39698575 gaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgtatccgtg 39698517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 31084357 - 31084281
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||| |||||| | || |||||||||    
T  31084357 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccggtgtccatgtctgtgcttcat 31084281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 8420061 - 8419985
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcag-tgtccgtgtccgtatcggtgcttca 257  Q
    ||||||||| ||||| |||||||||| ||  |||| |||||||| |||| | |||||||||||||||| ||||||||    
T  8420061 gaattatgttattttttcaaattattagctatgtcggcgtgtcattgtccggtgtccgtgtccgtatccgtgcttca 8419985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 19579734 - 19579682
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgt 235  Q
    ||||||||||||||||||||||||| || ||||| |||| |||||||| ||||    
T  19579734 aattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgt 19579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26716922 - 26716886
Alignment:
Q  19 ctaatacttcatcagactattttagtcatgttctaat 55  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26716922 ctaatacttcatcagactattttagtcatgttttaat 26716886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26986662 - 26986626
Alignment:
Q  19 ctaatacttcatcagactattttagtcatgttctaat 55  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26986662 ctaatacttcatcagactattttagtcatgttttaat 26986626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 16203797 - 16203874
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||| |||||||| |  ||||||| ||||||||||||||||| |||||||| || ||| |||||| |||||    
T  16203797 acaccgacacatataattacacta-aattatgagattttctcaaattattagcagtgtcggcatgttagtgtccgtgtc 16203874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 17123080 - 17123034
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||||||| || ||||  |||||||||||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 17123034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 21191081 - 21191135
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| || |||||||||| |||||    
T  21191081 gaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtc 21191135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 22423837 - 22423891
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||||||||| | |||||| | |||||||| || |||||    
T  22423837 gaattatgtgattttctcaaattattagtagtgtcagggtgtcagtatccgtgtc 22423891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 26716269 - 26716227
Alignment:
Q  58 atgtgacgtgaaacaataatagatgtctacgaaatacggacac 100  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  26716269 atgtggcgtgaaacaagaatagatgtctacgaagtacggacac 26716227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 26986009 - 26985967
Alignment:
Q  58 atgtgacgtgaaacaataatagatgtctacgaaatacggacac 100  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  26986009 atgtggcgtgaaacaagaatagatgtctacgaagtacggacac 26985967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 19552569 - 19552622
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||| ||||||||||  | ||||| ||||||||||||| |||||    
T  19552569 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 19552622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 21576770 - 21576847
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| || ||||  |||| |||||||  |||||| ||||| ||||| |||||||||    
T  21576770 gaattatgtgattttttcaaattattagctgtgttggcgtatcagtgttcgtgtccagtgtctgtatccgtgcttcat 21576847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 39205913 - 39205856
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtg 240  Q
    |||||| |||||||||||||||||| ||||||||  |||||| ||||| || ||||||    
T  39205913 aattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgtatccgtg 39205856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 28588699 - 28588773
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||||||||||||||  | ||||| |||||||| ||| | ||| |||||||||||  |||||||||    
T  28588699 gaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgtta-tgt-cgtgtccgtattcgtgcttcat 28588773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 41091282 - 41091318
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccg 218  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  41091282 gaattatgtgattttctcaaatcattagcagtgtccg 41091318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 41995525 - 41995451
Alignment:
Q  160 caccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||| ||||||||| | ||||||||||||||| || ||||||| |  ||||| ||||||||||||| |||||    
T  41995525 caccgacac-ttaattacatt-gaattatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtc 41995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 36878495 - 36878419
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||  |||||||||||||||| |||||||||    
T  36878495 gaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtgtccgtatccgtgcttcat 36878419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 9709877 - 9709800
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||  || |||||||||| |||||    
T  9709877 acaccgacacatataattacaa-cgaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtc 9709800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 2896146 - 2896199
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgt 235  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||| ||||    
T  2896146 gaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 6427384 - 6427322
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||||||||||||||||||||||| || ||||  ||||||||||||| ||| ||||||||||    
T  6427384 gaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgtg-ccgtgtccgt 6427322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 10572591 - 10572661
Alignment:
Q  159 acaccgacacatt-aattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||| |  ||||| ||||||||||||    
T  10572591 acaccgacacatttaattacac-cgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgt 10572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 14359548 - 14359621
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||||||||| |||||||||| || ||||| ||||||| ||||| ||||| ||||||||||| |||||||||    
T  14359548 aattatgtgatttt-tcaaattattagctgtgtcggcgtgtccgtgtctgtgtc-gtgtccgtatccgtgcttcat 14359621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 398790 - 398844
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||    
T  398790 gaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 18556482 - 18556544
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||||||||| || |||||||||| || ||||| ||||||||||||| |||||||| |||||    
T  18556482 aattatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgt 18556544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 46348409 - 46348471
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||| ||||||| |||||||||| || ||||| ||||||||||||| |||||||| |||||    
T  46348409 aattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgt 46348471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 16164257 - 16164365
Alignment:
Q  97 acactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattt 195  Q
    ||||| || ||||||||||||||||||  | |||||||||||| ||| |||||||||| |  |||  ||||||| ||||||| ||  |||||||||||||    
T  16164257 acactcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacg--acaatgacacatataattac-attaaattatgtgattt 16164353  T
Q  196 tctcaaattatt 207  Q
    | ||||||||||    
T  16164354 tttcaaattatt 16164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 17831556 - 17831604
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||| ||||||||||||||||||||| || ||||| |||||||||||||    
T  17831556 gaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 17831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 1262918 - 1262871
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    |||||||||||||||||||||||||| || ||||| ||||||| ||||    
T  1262918 gaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgt 1262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 19562650 - 19562693
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||    
T  19562650 tatgagattttctcaaattattagcagtgtcggcgtgtcagtgt 19562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 48450613 - 48450687
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||| ||||| |||||||||| || ||||  ||||||||||||| |||| ||||||||||||  ||||||||    
T  48450613 aattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgt-cgtgtccgtatccatgcttcat 48450687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 1486734 - 1486788
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||| || |||||    
T  1486734 gaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtc 1486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 6415028 - 6415082
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccg 238  Q
    |||||||||||||||||||| ||| ||  |||| ||||||||||||| |||||||    
T  6415028 attatgtgattttctcaaataattagcgatgtcggcgtgtcagtgtccgtgtccg 6415082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 12443485 - 12443527
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtc 224  Q
    |||||||||||||||||||||||||| || ||||| |||||||    
T  12443485 gaattatgtgattttctcaaattattagctgtgtcggcgtgtc 12443527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 15641055 - 15641109
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||| |||||||||||| |||||||| |||||||| || |||||||||| |||||    
T  15641055 gaatcatgtgattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtc 15641109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 24577211 - 24577292
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtg-tccgtgtccgtatcggtgcttcattgtgt 263  Q
    ||||||||||||||| |||||||||| |  ||||| ||||||| ||||| ||| || ||||||||||| ||||||||| ||||    
T  24577211 gaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtc-gtgttcagtgtccgtatccgtgcttcatagtgt 24577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 40181905 - 40181871
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||||||||||||||||||||||| ||||||||    
T  40181905 gaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 1864882 - 1864930
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatt 207  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  1864882 acaccgacacatataattacact-gaattatgtgattttctcaaattatt 1864930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 3490426 - 3490463
Alignment:
Q  193 ttttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtc 3490463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 5927366 - 5927419
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||| ||||||| |||||||||| |||||||  ||||||||||||| |||||    
T  5927366 aattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtc 5927419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 29144394 - 29144443
Alignment:
Q  193 ttttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtc 242  Q
    |||| |||||||||| || ||||| |||| ||||||||||||||||||||    
T  29144394 ttttttcaaattattagctgtgtcggcgtatcagtgtcagtgtccgtgtc 29144443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 38075998 - 38076070
Alignment:
Q  185 ttatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||| ||||||||||| ||||||||  |||||| ||||| |||||| ||||| || | |||||||||    
T  38075998 ttatgtgatttactcaaattattagcagtgtcgtcgtgtccgtgtc-gtgtccatgtccctacccgtgcttcat 38076070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 38078686 - 38078769
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt-------cagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| || |||||  |||||||||||       | ||||||||||||||||| |||||||||    
T  38078686 gaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgtccgtatccgtgcttcat 38078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 113333 - 113289
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcag 226  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||    
T  113333 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcag 113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 5898291 - 5898362
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgct 254  Q
    ||||||||||||||| ||| |||||| || ||||| |||| |||||||| |||| | |||||||||| |||||    
T  5898291 gaattatgtgattttttcagattattagcggtgtcggcgtctcagtgtctgtgt-catgtccgtatccgtgct 5898362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 10475002 - 10475050
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||| ||||| || ||||| |||||||| ||||    
T  10475002 gaattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtc 10475050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 23636074 - 23636149
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||| ||||||||||||| || || || || |||||||| |||| |||| ||||| |||||| |||||||||    
T  23636074 gaattatgtaattttctcaaatttttggcggtttcggcgtgtcaatgtccgtgt-cgtgtgcgtatctgtgcttcat 23636149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 23653386 - 23653354
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtc 216  Q
    ||||||||||||||||||||||||||| |||||    
T  23653386 attatgtgattttctcaaattatttgcggtgtc 23653354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 25452152 - 25452206
Alignment:
Q  159 acaccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgt 215  Q
    |||||||||||| ||||||| | |||||||| ||||||||||||||||| |||||||    
T  25452152 acaccgacacat-aattacact-gaattatgagattttctcaaattattagcagtgt 25452206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 44482287 - 44482240
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattat 206  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||    
T  44482287 acaccgacacatataattacact-gaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 46348446 - 46348478
Alignment:
Q  226 gtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||||||||||| |||||||||    
T  46348446 gtgtcagtgtccgtgtccgtatccgtgcttcat 46348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 51845 - 51768
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcatt 259  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||||| ||| |||| ||||||||||    
T  51845 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccatatctgtgcttcatt 51768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 16766818 - 16766683
Alignment:
Q  93 acggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtg 191  Q
    ||||||| | || ||||||||||||||| ||  | ||||||||||||||||  ||||| ||| |||||  |||||| | |||||||| | ||||||||||    
T  16766818 acggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacac--cgacacttgtaattacact-gaattatgtg 16766722  T
Q  192 attttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||| |||||||||| || ||||| |||||||||||||    
T  16766721 attttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 7723275 - 7723341
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtca-gtgtccgtgtccgtat 247  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||| | ||||||||||    
T  7723275 gaattatatgattttctcaaattattagcagtgtccacgtgtcagtgtcatgtgcctgtgtccgtat 7723341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 10842565 - 10842503
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||| |||||||||||||    
T  10842565 aattatgtgattttttcaaattattagcggtgtcggcgtgtccgtgtcaatgtccgtgtccgt 10842503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 16833338 - 16833266
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcatt 259  Q
    ||||||||||| |||||||||| |  ||||| ||||||||||||| |||| |||||||||||| ||||||||||    
T  16833338 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgt-cgtgtccgtatcagtgcttcatt 16833266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 7265595 - 7265666
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||| || ||||  |||||||||||||    
T  7265595 acaccgacacatataattacact-gaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 17841615 - 17841671
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgt 239  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||||| ||||||||    
T  17841615 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 17841671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 9025496 - 9025554
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtcc 217  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||    
T  9025496 acaccgacacatataattacact-gaattatgtgattttctcaaattattagcagtgtcc 9025554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 9629440 - 9629374
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtca 225  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||| || ||||| ||||||||    
T  9629440 acaccgacacatataattacatt-gaattatgtgattttctcaaattattggcggtgtcggcgtgtca 9629374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 19147431 - 19147486
Alignment:
Q  185 ttatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtg 240  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||| || ||||||    
T  19147431 ttatgtgattttctcaaattattagctgtgtccgtgtgtcagtgtccgtatccgtg 19147486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 9027212 - 9027158
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||| |||||||||||| || ||||| ||||||||||||| |||||    
T  9027212 gaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 9658913 - 9658859
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||||| |||||    
T  9658913 gaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 12696358 - 12696276
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc-----agtgtccgtgtccgtatcggtgcttcatt 259  Q
    ||||||||| ||||| |||||||||| || ||||| |||||||||||||      ||||||||||||||||| ||||||||||    
T  12696358 gaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtgtccgtatccgtgcttcatt 12696276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 7801181 - 7801258
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtg-tcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| |  ||||| |||||| |||| || || |||||||||||||| |||||||||    
T  7801181 gaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggtatccgtgtccgtatccgtgcttcat 7801258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 19040386 - 19040341
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagt 227  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||    
T  19040386 gaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 19040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 20371138 - 20371191
Alignment:
Q  185 ttatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccg 238  Q
    ||||||||||||||||||||||| || ||||| |||||||| |||| |||||||    
T  20371138 ttatgtgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtccg 20371191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 7996403 - 7996451
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||| |||||||||||||||||| |||||||| || ||||||||||    
T  7996403 gaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 8022398 - 8022350
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||| |||||||||||||||||| |||||||| || ||||||||||    
T  8022398 gaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 10770699 - 10770774
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| |  ||||  |||||||||||||  ||| |||||||||||| |||||||||    
T  10770699 gaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgt-cgtgtccgtatccgtgcttcat 10770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 677869 - 677818
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgt 235  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  677869 attatatgattttctcaaattattaacagtgtcggcgtgtcagtgtctgtgt 677818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 10339151 - 10339198
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    |||||||||||||||||||||||| | || ||||| ||||||||||||    
T  10339151 gaattatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgt 10339198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 26562723 - 26562676
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    ||||||||||||||||||||||| || |||||||| ||||||| ||||    
T  26562723 gaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 30866149 - 30866223
Alignment:
Q  162 ccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||| || ||||  | ||||| |||||||||||    
T  30866149 ccgacacatataattacatt-gaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 33001291 - 33001357
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtca 225  Q
    |||||||||||| |||||||| |  |||||||||||||| |||||||||| |||||||| ||||||||    
T  33001291 acaccgacacatataattacattt-aattatgtgattttttcaaattattagcagtgtcggcgtgtca 33001357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 7086852 - 7086775
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||| |||||||| |  ||||||||||||||||||||||||| |||||| |  |||||| ||||| |||||    
T  7086852 acaccgacacatataattacacta-aattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtc 7086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 426540 - 426593
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||| ||||||||||  | ||||| ||||||||||||| |||||    
T  426540 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 8805598 - 8805651
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||||||||||||| |||||| |  |||||| ||||| |||||    
T  8805598 aattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtc 8805651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 9617491 - 9617443
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatt 207  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  9617491 acaccgacacatataattacatt-gaattatgtgattttctcaaattatt 9617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 20370509 - 20370584
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc---agtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||| |||||||||||||||| |||| ||| || |||| |||||   |||||||||||||||||  |||||||||    
T  20370509 tatgtaattttctcaaattattagcagagtcggcatgtcggtgtctatagtgtccgtgtccgtattcgtgcttcat 20370584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 5462730 - 5462695
Alignment:
Q  171 taattacaatcgaattatgtgattttctcaaattatt 207  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5462730 taattacaat-gaattatgtgattttctcaaattatt 5462695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 5732539 - 5732583
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||||||||||  | ||||| |||||||||||||    
T  5732539 tatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtc 5732583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 17841652 - 17841684
Alignment:
Q  226 gtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||||||||||| |||||||||    
T  17841652 gtgtcagtgtccgtgtccgtatcagtgcttcat 17841684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 19044498 - 19044450
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||| ||||||||||||| |  ||||| |||||||||||||    
T  19044498 gaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtc 19044450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 31579229 - 31579275
Alignment:
Q  159 acaccgacacattaattacaatcgaattatgtgattttctcaaattatt 207  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  31579229 acaccgacacat-aattacact-gaattatgtgattttctcaaattatt 31579275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 21782767 - 21782890
Alignment:
Q  107 gattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacac---accgacacattaattacaatcgaattatgtgattttctcaaat 203  Q
    |||||| ||||||| ||  |||||||||||| ||| || |||||||||  ||||   |||| ||||| ||||||| | ||||||||||||||||||||||    
T  21782767 gattagacgtgtcccggtgttggacacgtgtcgtgcctgacaccaacacaacacgacaccggcacat-aattacact-gaattatgtgattttctcaaat 21782864  T
Q  204 tatttgcagtgtccgcgtgtcagtgt 229  Q
    |||| |||||||| ||||||||||||    
T  21782865 tattagcagtgtcggcgtgtcagtgt 21782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 38117183 - 38117260
Alignment:
Q  181 cgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttcat 258  Q
    |||| ||||||||||| |||||||||| || ||||| ||||||||||||| |||||| ||||||||||| |||||||||    
T  38117183 cgaagtatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttcat 38117260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 31284106 - 31284035
Alignment:
Q  159 acaccgacacat--taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||||||| |||||||| |||||| |||||    
T  31284106 acaccgacacataataattacaatgga-ttatgtgattttctcaaattattagcagtgtcggcgtgtaagtgt 31284035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 30404875 - 30404950
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| ||||||||||  | ||||| ||||||||||||| |||| | |||||||||| |||||||||    
T  30404875 gaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgt-catgtccgtatccgtgcttcat 30404950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 28677943 - 28677880
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||||||||||||| |||||||||| || ||||| ||||  ||||||||||||| ||||||||    
T  28677943 gaattatgtgattttttcaaattattagcggtgtcggcgttccagtgtcagtgtcagtgtccgt 28677880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 30527621 - 30527680
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtc 242  Q
    |||||| ||||||||||||||||||  ||||||  | |||||||||||||||||||||||    
T  30527621 aattatatgattttctcaaattattaacagtgtgggtgtgtcagtgtcagtgtccgtgtc 30527680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 37559011 - 37558948
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||||||||||||  ||||||||| || ||||| ||||||||||||| |||||||| |||||    
T  37559011 gaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgt 37558948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 21616796 - 21616742
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||||||||| || ||||| ||||||| ||||| |||||    
T  21616796 gaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtc 21616742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 18420459 - 18420504
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagt 227  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||    
T  18420459 gaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 23718082 - 23718006
Alignment:
Q  160 caccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||| |||||||| | ||||||||||| |||||||||||||| || ||||| | ||||||||||| |||||    
T  23718082 caccgacacatataattacact-gaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 23718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 24105754 - 24105678
Alignment:
Q  160 caccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||| |||||||| | ||||||||||| |||||||||||||| || ||||| | ||||||||||| |||||    
T  24105754 caccgacacatataattacact-gaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 896241 - 896198
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||    
T  896241 tatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 38355858 - 38355933
Alignment:
Q  126 ttggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaat 203  Q
    ||||||||||||||| || |||||||| |||  |||||||||||| |||| ||| | ||||||||||||||||||||||    
T  38355858 ttggacacgtgttgtatccaacaccaatatg--acaccgacacatataatcacact-gaattatgtgattttctcaaat 38355933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 27084296 - 27084238
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtg 240  Q
    ||||||| |||||||||||||||||| |||||||| | ||||| ||||| || ||||||    
T  27084296 gaattatatgattttctcaaattattagcagtgtcggagtgtccgtgtccgtatccgtg 27084238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 37411269 - 37411323
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||||||||| || ||||| || |||||| ||| |||||    
T  37411269 gaattatgtgattttctcaaattattagcggtgtcggcatgtcagcgtctgtgtc 37411323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 44860406 - 44860320
Alignment:
Q  128 ggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||| ||| ||||| |||||||||| |||||  |||||||| |||||||| | |||||||| ||||||||||||||||| || |||||    
T  44860406 ggacacatgtcgtgtccaacaccaacacgacac--cgacacatataattacact-gaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 24894423 - 24894370
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgt 235  Q
    ||||||||||||||| | |||||||| || ||||| ||||||||||||| ||||    
T  24894423 gaattatgtgatttttttaaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 31727885 - 31727837
Alignment:
Q  188 tgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||| | |||||| |||||||||| || |||||    
T  31727885 tgtgattttctcaaattattagtagtgtcagcgtgtcagtatctgtgtc 31727837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 37419777 - 37419729
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||| ||||||||| |||||||||||||  |||| |||||||||||||    
T  37419777 gaattttgtgattttttcaaattatttgccatgtcggcgtgtcagtgtc 37419729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 35723409 - 35723484
Alignment:
Q  182 gaattatgtg-attttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||||| |||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  35723409 gaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtca-tgt-cgtgtccgtatcggtgcttcat 35723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 30982816 - 30982924
Alignment:
Q  93 acggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtg 191  Q
    ||||||||| |||||||||||||||||| ||  | |||||||||| |||||| ||||| ||| |  |||||||||| | |||||||| | ||| ||||||    
T  30982816 acggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacg--acaccgacacttataattacact-gaaatatgtg 30982912  T
Q  192 attttctcaaat 203  Q
    ||||||||||||    
T  30982913 attttctcaaat 30982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 15029799 - 15029751
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||| || |||||||||| |||||||| |||||||||||||    
T  15029799 gaattatgtgatattttcaaattattagcagtgtctgcgtgtcagtgtc 15029751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 24613639 - 24613751
Alignment:
Q  93 acggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtg 191  Q
    |||||||||  | ||||||| ||||||||||  |  ||||||||| |||||| ||||| |||||||||  |||||| | || ||||| | ||||||||||    
T  24613639 acggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacac--cgacacttgtacttacatt-gaattatgtg 24613735  T
Q  192 attttctcaaattatt 207  Q
    ||||||||||||||||    
T  24613736 attttctcaaattatt 24613751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 848077 - 847931
Alignment:
Q  88 gaaatacggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaatt 186  Q
    |||| |||||||||  |||||||||| |||||| ||  || ||||||| | |||||  ||||||||| |||||  |||||| | |||||| | | |||||    
T  848077 gaaacacggacactccttggattaggtgtgtcccggtgttcgacacgtttcgtgtccgacaccaacaagacac--cgacacttgtaattatagt-gaatt 847981  T
Q  187 atgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||| |||||||||||||||| || |  || ||||||||||||| |||||    
T  847980 atgtaattttctcaaattattagcggcatcggcgtgtcagtgtctgtgtc 847931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 21873396 - 21873430
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtc 216  Q
    ||||||||||||||| |||||||||||||||||||    
T  21873396 gaattatgtgattttatcaaattatttgcagtgtc 21873430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 21929257 - 21929291
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtc 216  Q
    ||||||||||||||| |||||||||||||||||||    
T  21929257 gaattatgtgattttatcaaattatttgcagtgtc 21929291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 23293011 - 23293065
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| |||||||| |||| |||||    
T  23293011 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 23293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 30298942 - 30298908
Alignment:
Q  226 gtgtcagtgtccgtgtccgtatcggtgcttcattg 260  Q
    ||||||||||||||||||||||| |||||||||||    
T  30298942 gtgtcagtgtccgtgtccgtatctgtgcttcattg 30298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 30327810 - 30327776
Alignment:
Q  226 gtgtcagtgtccgtgtccgtatcggtgcttcattg 260  Q
    ||||||||||||||||||||||| |||||||||||    
T  30327810 gtgtcagtgtccgtgtccgtatctgtgcttcattg 30327776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 7012100 - 7012024
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcatt 259  Q
    ||||||||| ||||||||||||||||  | ||||| ||||||| ||||| |||||| |||| || || ||||||||||    
T  7012100 gaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcc-tgtctgtgtctgtgcttcatt 7012024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 30103382 - 30103414
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgt 215  Q
    ||||||||||||||||||||||||||| |||||    
T  30103382 aattatgtgattttctcaaattatttggagtgt 30103414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 36635358 - 36635310
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||||||||| |  ||||  |||||||||||||    
T  36635358 gaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 40613504 - 40613441
Alignment:
Q  162 ccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtca 225  Q
    ||||||||| |||||||| | ||||||||||||||||||||| |||| || ||||| ||||||||    
T  40613504 ccgacacatataattacact-gaattatgtgattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 13844598 - 13844669
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  13844598 acaccgacacatataattacactc-aattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtc 13844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 31236580 - 31236644
Alignment:
Q  160 caccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtc 224  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| |||||||    
T  31236580 caccgacacatataattacatt-gaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 40332249 - 40332189
Alignment:
Q  158 cacaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccg 218  Q
    ||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||    
T  40332249 cacaccgacacttgtaattacact-gaattatgtgattttctcaaattatttgcagtgtccg 40332189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 22652010 - 22651956
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||    
T  22652010 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 37283813 - 37283889
Alignment:
Q  158 cacaccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||| ||||||| | ||||||||||||||||||| |||||| || ||| |||| |||||||||| |||||    
T  37283813 cacaccgacacat-aattacact-gaattatgtgattttctcagattattagcggtgcccgcatgtcagtgtccgtgtc 37283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 13436989 - 13437037
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||||||    
T  13436989 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 13437037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39954305 - 39954353
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtca 231  Q
    ||||||||||||||||||||||||| || ||||| ||||||| ||||||    
T  39954305 aattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtca 39954353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 14134733 - 14134670
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    |||||||||||||||||||||||||| | | ||||  |||||| ||||| |||||||| |||||    
T  14134733 gaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtcggtgtccgtatccgt 14134670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 20873102 - 20873028
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||||||||| ||||||||||  |  |||| ||||||||||||| |||| |||||||||||  |||||||||    
T  20873102 aattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgt-cgtgtccgtattcgtgcttcat 20873028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 27213601 - 27213539
Alignment:
Q  162 ccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtc 224  Q
    ||||||||| |||||||| | ||||||||||||||||| |||||||| |||||||| |||||||    
T  27213601 ccgacacatataattacagt-gaattatgtgattttctgaaattattagcagtgtcggcgtgtc 27213539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 36450779 - 36450842
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||| ||||||||| |||||||||| |  ||||| ||||||||||||| |||||||| |||||    
T  36450779 gaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgt 36450842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 12606831 - 12606888
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||||||||| |||||||| | ||||||| |||||||||||||||||| ||||||||    
T  12606831 acaccgacacatataattacatt-gaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 24362227 - 24362281
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||| |||||||||||| || ||||| ||||||| ||||| |||||    
T  24362227 gaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtc 24362281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 29510329 - 29510383
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||| ||||||||| |||||||||| || ||||| ||||||||||||| |||||    
T  29510329 gaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 29510383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 14731745 - 14731712
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtc 216  Q
    ||||||||||||||||||||||||| ||||||||    
T  14731745 aattatgtgattttctcaaattattagcagtgtc 14731712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 22596028 - 22595952
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttcat 258  Q
    ||||||||| ||||| | |||||||| || ||||| ||||||||||||  |||||| ||||||||||| |||||||||    
T  22596028 gaattatgttatttttttaaattattagctgtgtcggcgtgtcagtgt-tgtgtccggtgtccgtatccgtgcttcat 22595952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 4786340 - 4786411
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||| |||||||| | ||||||||||||||||| ||||||||    ||||| |||||||||||||    
T  4786340 acaccgacacatataattacact-gaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 29776070 - 29775995
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||| ||||||||||||||||||| ||||||||  | ||||| |||| |||| |||| ||||||  |||||||||    
T  29776070 gaattacgtgattttctcaaattattagcagtgtcgacttgtcaatgtccgtgt-cgtgaccgtattcgtgcttcat 29775995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 34897119 - 34897071
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||||||||| || |||||  |||||| |||||    
T  34897119 gaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 36450817 - 36450849
Alignment:
Q  226 gtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||||||||||| |||||||||    
T  36450817 gtgtcagtgtccgtgtccgtatccgtgcttcat 36450849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 241715 - 241574
Alignment:
Q  93 acggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtg 191  Q
    |||||||||| | ||||||||||||||| ||  | |||||||||| |||||  ||||||||| |||||  ||||||   |||||||| |  |||||||||    
T  241715 acggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacac--cgacactcataattacacta-aattatgtg 241619  T
Q  192 attttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||  ||||||||| || ||||| ||||||||||||| |||||    
T  241618 atttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtc 241574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 32308154 - 32308106
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||    
T  32308154 gaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 11722123 - 11722197
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtcc-gtatcggtgcttc 256  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||||| |||| ||||||| ||||| |||||||    
T  11722123 gaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgt-cgtgtccggtatccgtgcttc 11722197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19206107 - 19206030
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||| |||||| ||| |||||||||||||||||||||||||| || ||||| ||||||  ||||| |||||    
T  19206107 acaccgacacatataattataat-gaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtc 19206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 22602712 - 22602781
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtg 228  Q
    |||||||||||| |||||||| | |||||||||||||||||||||| |||| | ||||| |||||||||||    
T  22602712 acaccgacacatataattacact-gaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtg 22602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 12289148 - 12289072
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtcc-gcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    |||||||||||||||||||||||||| |||||| || ||||||| ||||| ||||  ||||| ||||| |||||||||    
T  12289148 gaattatgtgattttctcaaattattagcagtggccggcgtgtcggtgtccgtgt-tgtgtctgtatccgtgcttcat 12289072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 25791685 - 25791624
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||||||| |||||||||| ||| || ||||| ||||||||||||| |||||||| |||||    
T  25791685 attatgtgaatttctcaaataattagcggtgtcggcgtgtcagtgtctgtgtccgtatccgt 25791624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 20549848 - 20549765
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtc 242  Q
    |||||||||||| |||||||| | |||||| ||||||||||||||||||| || ||||| | ||||||||||  ||||| |||||    
T  20549848 acaccgacacatataattacact-gaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgtatgtgtctgtgtc 20549765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 24339750 - 24339628
Alignment:
Q  106 ggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaatt 204  Q
    ||||||||||||||| ||  | ||| |||||| |||||  ||||| ||| |||||  |||||| | |||||||| | ||||||||||||||| |||||||    
T  24339750 ggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacac--cgacacttgtaattacact-gaattatgtgattttttcaaatt 24339654  T
Q  205 atttgcagtgtccgcgtgtcagtgtc 230  Q
    ||| || ||||| |||||||| ||||    
T  24339653 attagctgtgtcggcgtgtcaatgtc 24339628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 26733338 - 26733284
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || |||||  |||||||||||| |||||    
T  26733338 gaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtc 26733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 27945075 - 27945021
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||| |||||||||||||||| |  ||||| ||||||||||||| |||||    
T  27945075 gaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtc 27945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 6630888 - 6630985
Alignment:
Q  131 cacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    |||||||||||||  ||||||||| ||||   |||||||| |||||||| | |||||| |||| |||||||||||||| |  ||||| ||||||||||||    
T  6630888 cacgtgttgtgtccgacaccaacacgacat--cgacacatataattacact-gaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgt 6630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 11061102 - 11061155
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||| |||||||||| || ||||| | ||||||||||| |||||    
T  11061102 aattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtc 11061155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 22868076 - 22868023
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgt 235  Q
    ||||||||||||||||||| |||||| |  ||||| ||||||||||||| ||||    
T  22868076 gaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtcggtgt 22868023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 28401172 - 28401100
Alignment:
Q  187 atgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcattg 260  Q
    ||||||||||||||||||||| | ||||||  |||||  ||| | |||| |||||||||||| |||||||||||    
T  28401172 atgtgattttctcaaattattagtagtgtcgacgtgttggtgcccgtgt-cgtgtccgtatccgtgcttcattg 28401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 29787394 - 29787435
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgt 223  Q
    |||||||||||||||||||||||||| || ||||| ||||||    
T  29787394 gaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 45056926 - 45056959
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgt 215  Q
    |||||||||||||||||||||||||| |||||||    
T  45056926 gaattatgtgattttctcaaattattagcagtgt 45056959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 3520327 - 3520427
Alignment:
Q  140 tgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccg 238  Q
    ||||| ||||||||||| |||  |||||||| |||||||| | ||||||| |||||||||||||| |||  | ||||| |||||||| |||| ||||| |    
T  3520327 tgtctgacaccaacatgtcac--cgacacatataattacatt-gaattatatgattttctcaaatgattatcggtgtcagcgtgtcaatgtctgtgtctg 3520423  T
Q  239 tgtc 242  Q
    ||||    
T  3520424 tgtc 3520427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 5409861 - 5409909
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||| |||||||||| || || || |||||||||||||    
T  5409861 gaattatgtgattttttcaaattattagctgtatcagcgtgtcagtgtc 5409909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 15902879 - 15902781
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttca 257  Q
    |||||||||||| |||||||| |  |||||||||||||| ||||||||||    ||||| || |||||||||| |||| |||||||||||  ||||||||    
T  15902879 acaccgacacatataattacacta-aattatgtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgt-cgtgtccgtattcgtgcttca 15902782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 23191926 - 23191882
Alignment:
Q  186 tatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||||||||||||||| || ||||| |||| ||||||||    
T  23191926 tatgtgattttctcaaattattagcggtgtcggcgtatcagtgtc 23191882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 24105702 - 24105647
Alignment:
Q  192 attttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatc 248  Q
    ||||| |||||||||| || ||||| ||||||||||||| |||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgt-cgtgtccgtatc 24105647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 25481936 - 25481888
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||| |||||||||| || ||||| |||||||| ||||    
T  25481936 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtc 25481888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 30731071 - 30731031
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtg 222  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  30731071 gaattatgtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 35861998 - 35861938
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtc 242  Q
    ||||||||||||||| |||||||||| |  ||||| |||||| ||||| |||||| |||||    
T  35861998 gaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttagtgtctgtgtc 35861938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 42720916 - 42720964
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtca 231  Q
    |||||||||||||| |||||||||| || |||||  |||||||||||||    
T  42720916 aattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtca 42720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 43250025 - 43249973
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||| ||||||||||||||||  | ||||| ||||||||||||| |||||    
T  43250025 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtc 43249973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 4987228 - 4987363
Alignment:
Q  92 tacggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgt 190  Q
    ||||||||||  | ||||||||||||||| ||  | |||||||||| ||||| |||||| ||| | |||  | |||| | |||||||| | |||||||||    
T  4987228 tacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcac--caacacttgtaattacact-gaattatgt 4987324  T
Q  191 gattttctcaaattatttgcagtgtccgcgtgtcagtgt 229  Q
    |||||| |||||||||| || ||||| ||||||||||||    
T  4987325 gattttttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 10954986 - 10954911
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttc 256  Q
    ||||||||||||||| |||||||||| |  ||||| ||||||||||||  |||||| ||||||||||| |||||||    
T  10954986 gaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgtccggtgtccgtatccgtgcttc 10954911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 40052366 - 40052304
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||||| |||||    
T  40052366 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccgtatccgt 40052304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 25093559 - 25093482
Alignment:
Q  159 acaccgacacat-taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||| |||||||| | ||||| |||||||||||||||| |||  ||||||| |||||| ||||||||||||    
T  25093559 acaccgacacatataattacact-gaattgtgtgattttctcaaatcattaacagtgtcggcgtgttagtgtcagtgtc 25093482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 14979215 - 14979140
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| || ||||| ||||| || ||||  ||| |||||||||||| |||||||||    
T  14979215 gaattatgtgattttttcaaattattagctgtgtcggcgtgccattgtccttgt-cgtgtccgtatccgtgcttcat 14979140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 26508144 - 26508069
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||| || || | |||||||||||| || ||||||    
T  26508144 gaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtat-cgtgtccgtatccgttcttcat 26508069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 5407210 - 5407261
Alignment:
Q  95 ggacactttttggattaggcgtgtcctggcattggacacgtgt-tgtgtcta 145  Q
    ||||||| |||||||||||||||||||||| | |||||||||| ||||||||    
T  5407210 ggacactctttggattaggcgtgtcctggcgtcggacacgtgtctgtgtcta 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 10318064 - 10318119
Alignment:
Q  187 atgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtc 242  Q
    |||||| ||| |||||||||| || ||||| ||||||||||||| |||||||||||    
T  10318064 atgtgactttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtgtc 10318119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 20503499 - 20503437
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgt 245  Q
    ||||||||| ||||| ||||||||||||  ||||| ||||||||||||| |||||||| |||||    
T  20503499 gaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtc-gtgtccgtatccgt 20503437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 21720798 - 21720739
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgt 241  Q
    |||||||| ||| |||||||||||||  | ||||| ||||||||||||| ||||||||||    
T  21720798 gaattatgagatattctcaaattattatcggtgtcggcgtgtcagtgtccgtgtccgtgt 21720739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 5441056 - 5441110
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||||||||||| || || ||| | ||||||||||||| |||||    
T  5441056 gaattatgtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtc 5441110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 8383291 - 8383237
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||| |||||||||||||||||| || ||||| |||||||| |||| |||||    
T  8383291 gaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtc 8383237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 9624675 - 9624641
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||||||||||||||||||||||| ||||||||    
T  9624675 gaattatgtgattttctcaaattattagcagtgtc 9624641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 14829723 - 14829670
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||    
T  14829723 gaattatgtgatttt-tcaaattattagctgtgtcggcgtgtcagtgtctgtgtc 14829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 27277864 - 27277898
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtcc 217  Q
    ||||||||||||||||||||||||| |||||||||    
T  27277864 aattatgtgattttctcaaattattagcagtgtcc 27277898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 5407262 - 5407314
Alignment:
Q  171 taattacaatcgaattatgtgattttctcaaattatttgcagtgtccgcgtgtc 224  Q
    |||||||||| ||||||||||||||||||||||| || || ||||| |||||||    
T  5407262 taattacaat-gaattatgtgattttctcaaatttttagcggtgtcggcgtgtc 5407314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 8789575 - 8789651
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtcc-gtgtccgtatcggtgcttcat 258  Q
    |||||||||||||||||||||||||  || ||||| | ||||| ||||  |||||| ||||||||||| |||||||||    
T  8789575 gaattatgtgattttctcaaattataagccgtgtcggtgtgtctgtgt-tgtgtccggtgtccgtatccgtgcttcat 8789651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 11252033 - 11251978
Alignment:
Q  159 acaccgacacattaattacaatcgaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||| ||| ||||    
T  11252033 acaccgacacat-aattacact-gaattatgtgattttctcaaattattagcaatgtc 11251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 11313826 - 11313859
Alignment:
Q  183 aattatgtgattttctcaaattatttgcagtgtc 216  Q
    ||||||||||||||||||||||||| ||||||||    
T  11313826 aattatgtgattttctcaaattattagcagtgtc 11313859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 12674528 - 12674580
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||| |||||||||||||||||| |||||||| | |||||| |||| |||||    
T  12674528 attatttgattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtc 12674580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 15544727 - 15544679
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||||||||||||| |||||||||| || |||||  ||||||||||||    
T  15544727 gaattatgtgattttatcaaattattagcggtgtcaacgtgtcagtgtc 15544679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 21479152 - 21479104
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    ||||| ||||||||| |||||||||| || ||||| |||||||||||||    
T  21479152 gaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 21479104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24205068 - 24205120
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||| ||||||||||||||||  | ||||| ||||||||||||| |||||    
T  24205068 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtc 24205120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 26492238 - 26492305
Alignment:
Q  190 tgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtgtccgtatcggtgcttcat 258  Q
    ||||||| |||||||||| ||  |||| ||||||||||||| |||| |||||||||||  |||||||||    
T  26492238 tgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgt-cgtgtccgtattcgtgcttcat 26492305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 13434 - 13380
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||||||||| |  ||||| ||||||||||||| |||||    
T  13434 gaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 21893 - 21947
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    |||||||||||||||||||||||||| |  ||||| ||||||||||||| |||||    
T  21893 gaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 92841 - 92783
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccgtg 240  Q
    ||||||||| |||||||||||||||| || ||||| ||||||||||||| || ||||||    
T  92841 gaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccgtatccgtg 92783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 263310 - 263451
Alignment:
Q  93 acggacactttttggattaggcgtgtcctggcattggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtg 191  Q
    |||||||||  | |||||||||||||| ||| || | |||||||| |||||| ||||| ||| |||||   ||||| | |||||||| | ||||||||||    
T  263310 acggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacact--gacacttataattacact-gaattatgtg 263406  T
Q  192 attttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
     ||||||||||||||| |||||||   | |||||||||| |||||    
T  263407 gttttctcaaattattagcagtgttgacatgtcagtgtccgtgtc 263451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 20206 - 20152
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||||||||||| |||||||||| || ||||| |||||||| |||| |||||    
T  20206 gaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 20152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 44498 - 44572
Alignment:
Q  128 ggacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaatt 204  Q
    |||||||||||||||| |||||| ||| || ||  |||||||| |||||||| | |||||||||||||||||||||||    
T  44498 ggacacgtgttgtgtccaacaccgacacgatac--cgacacatataattacact-gaattatgtgattttctcaaatt 44572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 135337 - 135371
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtc 216  Q
    |||||||||||||||||||||||||| ||||||||    
T  135337 gaattatgtgattttctcaaattattagcagtgtc 135371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 71746 - 71681
Alignment:
Q  193 ttttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtccg-tgtccgtatcggtgcttcat 258  Q
    |||| |||||||||| || ||||| ||||||||||||| ||||||| |||||||||| |||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtc-gtgtccgatgtccgtatccgtgcttcat 71681  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 26427 - 26351
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc-cgtgtccgtatcggtgcttcat 258  Q
    |||||||||||||||||||||||||| |  |||||  ||||||| |||| |||||  ||||||||||| |||||||||    
T  26427 gaattatgtgattttctcaaattattagtggtgtcgacgtgtcactgtctgtgtctagtgtccgtatc-gtgcttcat 26351  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 192273 - 192322
Alignment:
Q  181 cgaattatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtc 230  Q
    |||||||||| ||||||||||||||||  | ||||| |||||||||||||    
T  192273 cgaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtc 192322  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 53214 - 53170
Alignment:
Q  182 gaattatgtgattttctcaaattatttgcagtgtccgcgtgtcag 226  Q
    |||||||||||||||||||||||||| || || || |||||||||    
T  53214 gaattatgtgattttctcaaattattggcggtatcggcgtgtcag 53170  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 9721 - 9797
Alignment:
Q  129 gacacgtgttgtgtctaacaccaacatgacacaccgacacat-taattacaatcgaattatgtgattttctcaaattatt 207  Q
    |||| |||| |||||| ||||||||| |||||  |||||||| |||||||| | |||||| |||||||||||||||||||    
T  9721 gacaagtgtcgtgtctgacaccaacacgacac--cgacacatataattacact-gaattaagtgattttctcaaattatt 9797  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 225295 - 225347
Alignment:
Q  184 attatgtgattttctcaaattatttgcagtgtccgcgtgtcagtgtcagtgtc 236  Q
    ||||||| ||||||||||||||||  | ||||| ||||||||||||| |||||    
T  225295 attatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtc 225347  T

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