View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16663_low_1 (Length: 484)
Name: NF16663_low_1
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 22568852 - 22569336
Alignment:
| Q |
8 |
tcgaagaaaattccaacaatatttcacataaaaagagaataagttccaacggtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcat |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22568852 |
tcgaagaaaattccaacagtatttcacataaaaagagaataagttccaacagtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcat |
22568951 |
T |
|
| Q |
108 |
acattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22568952 |
acattatataaaagaaaaactacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgta |
22569051 |
T |
|
| Q |
208 |
ttatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtacc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22569052 |
ttatcagcaatagcctcaataattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtacc |
22569151 |
T |
|
| Q |
308 |
aatgatactttccat--------gtgttggtcttggcgatgatgaccgagaatcctcataaagacgaggaccctatacacccttcgatatgtcagccgtg |
399 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22569152 |
aatgatgctttccatgaagacgagtgttggtcttggtgatgatgaccgagaatcctcataaagacgaggaccctatacacccttccatatgtcagccgtg |
22569251 |
T |
|
| Q |
400 |
agtgcgattgaaaagctatttccaatgtaagaacctccctggatactcttggatgcggcagccattattctggtgagtattgtgc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22569252 |
agtgcgattgaaaagctatttccaatgtaagaacctccctggatactcttggatgcggcagccattattctggtgagttttgtgc |
22569336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University