View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16663_low_12 (Length: 237)

Name: NF16663_low_12
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16663_low_12
NF16663_low_12
[»] scaffold0349 (4 HSPs)
scaffold0349 (1-98)||(4122-4219)
scaffold0349 (162-237)||(4455-4530)
scaffold0349 (162-219)||(9097-9156)
scaffold0349 (58-93)||(8427-8462)
[»] chr6 (8 HSPs)
chr6 (1-98)||(27725546-27725643)
chr6 (162-237)||(27725877-27725952)
chr6 (1-93)||(27593758-27593850)
chr6 (1-93)||(27678220-27678312)
chr6 (1-45)||(27699155-27699199)
chr6 (90-163)||(27585408-27585481)
chr6 (162-219)||(27719675-27719734)
chr6 (58-93)||(27719005-27719040)


Alignment Details
Target: scaffold0349 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4122 - 4219
Alignment:
Q  1 tgaaccaaatggttaattaaacttgcacacacaattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataaatatt 98  Q
    |||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  4122 tgaaccaaatggttaattaaccatgtacacacaattatttcagtaggctttcacgttaaatggataattagctatacaacagaactaacataattatt 4219  T

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Target: scaffold0349; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 4455 - 4530
Alignment:
Q  162 tatgaaaagatggagtgatggcacacaaggctcacaacaaatttttccttataaagaacatcaaattcagaaattc 237  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4455 tatgaaacgatggagtgatggcacacaaggctcacaacaaatttgtccttataaagaacatcaaattcagaaattc 4530  T

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Target: scaffold0349; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 9097 - 9156
Alignment:
Q  162 tatgaaaagatggagtgatggc--acacaaggctcacaacaaatttttccttataaagaa 219  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  9097 tatgaaacgatggagtgatggcgcacacaaggctcacaacaaatttgtcattataaagaa 9156  T

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Target: scaffold0349; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 8427 - 8462
Alignment:
Q  58 aaatggataattagctatccaacagaactaacataa 93  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8427 aaatggataattagctatccaacggaactaacataa 8462  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27725546 - 27725643
Alignment:
Q  1 tgaaccaaatggttaattaaacttgcacacacaattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataaatatt 98  Q
    |||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27725546 tgaaccaaatggttaattaaccatgtacacacaattatttcagtaggctttcacgttaaatggataattagctatacaacagaactaacataattatt 27725643  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 27725877 - 27725952
Alignment:
Q  162 tatgaaaagatggagtgatggcacacaaggctcacaacaaatttttccttataaagaacatcaaattcagaaattc 237  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27725877 tatgaaacgatggagtgatggcacacaaggctcacaacaaatttgtccttataaagaacatcaaattcagaaattc 27725952  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27593758 - 27593850
Alignment:
Q  1 tgaaccaaatggttaattaaacttgcacacacaattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataa 93  Q
    |||||||||||||||||||| | ||||||||||||||||   |||    || ||||||||||  |||||||||||||||||||||||| ||||    
T  27593758 tgaaccaaatggttaattaaccatgcacacacaattattattgtacatgtttacgttaaatgtttaattagctatccaacagaactaatataa 27593850  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27678312 - 27678220
Alignment:
Q  1 tgaaccaaatggttaattaaacttgcacacacaattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataa 93  Q
    |||||||||||||||||||| | ||||||||||||||||   |||    || ||||||||||  |||||||||||||||||||||||| ||||    
T  27678312 tgaaccaaatggttaattaaccatgcacacacaattattattgtacatgtttacgttaaatgtttaattagctatccaacagaactaatataa 27678220  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27699155 - 27699199
Alignment:
Q  1 tgaaccaaatggttaattaaacttgcacacacaattattccagta 45  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  27699155 tgaaccaaatggttaattaaccttgcacacacaattattccagta 27699199  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 27585408 - 27585481
Alignment:
Q  90 ataaatattggaaaaataaagattgaattgaaggcaacatcagaatggattgaaagactgggtgatgatattta 163  Q
    |||||| ||||||||| ||||||||| |||| || |||||| ||||||||||||||| | ||| ||||||||||    
T  27585408 ataaatgttggaaaaagaaagattgagttgaggggaacatctgaatggattgaaagattaggtaatgatattta 27585481  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 27719675 - 27719734
Alignment:
Q  162 tatgaaaagatggagtgatggc--acacaaggctcacaacaaatttttccttataaagaa 219  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  27719675 tatgaaacgatggagtgatggcgcacacaaggctcacaacaaatttgtcattataaagaa 27719734  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 27719005 - 27719040
Alignment:
Q  58 aaatggataattagctatccaacagaactaacataa 93  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27719005 aaatggataattagctatccaacggaactaacataa 27719040  T

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