View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16663_low_13 (Length: 215)
Name: NF16663_low_13
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 4172034 - 4171841
Alignment:
| Q |
20 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4172034 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
4171935 |
T |
|
| Q |
120 |
ttgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4171934 |
ttgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacat |
4171841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 4159967 - 4160163
Alignment:
| Q |
19 |
atttaggatgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggc |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4159967 |
atttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattccaaaatgattaatttggc |
4160066 |
T |
|
| Q |
119 |
attgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattt |
215 |
Q |
| |
|
| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160067 |
aatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattt |
4160163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 4177641 - 4177466
Alignment:
| Q |
36 |
tgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaatt |
135 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||||| || |||||||| |||||||||||||| ||| |||| || |||||||||| |||||| ||| |
|
|
| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
|
| Q |
136 |
ttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagac |
211 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagac |
4177466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 34343521 - 34343624
Alignment:
| Q |
84 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatg |
183 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| |||||| |||| | | |||||||| | | | ||||| |||||||||||||||||||||| || |
|
|
| T |
34343521 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactg |
34343620 |
T |
|
| Q |
184 |
gaac |
187 |
Q |
| |
|
|||| |
|
|
| T |
34343621 |
gaac |
34343624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 34330989 - 34331039
Alignment:
| Q |
159 |
attgtggatgttggtggtggaaatggaacaactggtaagattatttgtgag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||| ||||| |||||| |
|
|
| T |
34330989 |
attgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgag |
34331039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University