View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16663_low_14 (Length: 214)
Name: NF16663_low_14
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 53498819 - 53499008
Alignment:
| Q |
13 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498819 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaaca |
53498918 |
T |
|
| Q |
113 |
tagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498919 |
tagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttca |
53499008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 53491223 - 53491414
Alignment:
| Q |
13 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaa |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
53491223 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
53491322 |
T |
|
| Q |
111 |
catagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttca |
202 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||| |
|
|
| T |
53491323 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttca |
53491414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 16069999 - 16070087
Alignment:
| Q |
107 |
acaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatactt |
195 |
Q |
| |
|
||||||| |||||||| |||||| ||||| || || ||| |||||||| | ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
16069999 |
acaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagggacacctttcatttcccattcagaatactt |
16070087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
152 |
tcaatccttagagggacgcctttcatttcccattcagaa |
190 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 45355440 - 45355367
Alignment:
| Q |
119 |
acctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaata |
192 |
Q |
| |
|
||||| |||||| |||||||| | |||| ||||||||||||||||| || |||||||||||||| | |||||| |
|
|
| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaata |
45355367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University