View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_15 (Length: 203)
Name: NF16663_low_15
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4751027 - 4750830
Alignment:
| Q |
1 |
catctatacaaatgtgtattttgttgttttattgnnnnnnnnn-ccttcctttttctccttaacgtaatatttctttcacacgctctttgattggctata |
99 |
Q |
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| T |
4751027 |
catctatataaatgtgtattttgttgttttattcttttttttttccttcctttttctccttaacgtaatatttctttcacacgctctttcattggctata |
4750928 |
T |
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| Q |
100 |
cacaaagttagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatattagtttcaaaaacaaagga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750927 |
cacaaagttagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatattagtttcaaaaacaaagga |
4750830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 4744216 - 4744116
Alignment:
| Q |
86 |
tttgattggctatacacaaa--gttagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatattagtt |
183 |
Q |
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||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
4744216 |
tttgattggctatacccaaaaagttagaattggtttcaaaatcaaacttt-----tactacttaacttacactctaagaacaacaagaataatattggtt |
4744122 |
T |
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| Q |
184 |
tcaaaa |
189 |
Q |
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|||||| |
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| T |
4744121 |
tcaaaa |
4744116 |
T |
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