View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_2 (Length: 475)
Name: NF16663_low_2
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 22568871 - 22569336
Alignment:
| Q |
18 |
tatttcacataaaaagagaataagttccaacggtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcatacattatataaaagaaaaa |
117 |
Q |
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| T |
22568871 |
tatttcacataaaaagagaataagttccaacagtatcgcctttcatccaaaacaaaaactatttcaagaattaacctgcatacattatataaaagaaaaa |
22568970 |
T |
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| Q |
118 |
ctacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgtattatcagcaatagcctcaa |
217 |
Q |
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| T |
22568971 |
ctacaaggtcattgaaactaccagagaaaaacattgagattaatcataacacaacttgtccccaaaattaaaattgatgtattatcagcaatagcctcaa |
22569070 |
T |
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| Q |
218 |
taattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtaccaatgatactttccat---- |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22569071 |
taattttaatgttgatcagatattcttcaggacaacttgtttgaatcagctttaatactcgaagttggaaaacacggtaccaatgatgctttccatgaag |
22569170 |
T |
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| Q |
314 |
----gtgttggtcttggcgatgatgaccgagaatcctcataaagacgaggaccctatacacccttcgatatgtcagccgtgagtgcgattgaaaagctat |
409 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22569171 |
acgagtgttggtcttggtgatgatgaccgagaatcctcataaagacgaggaccctatacacccttccatatgtcagccgtgagtgcgattgaaaagctat |
22569270 |
T |
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| Q |
410 |
ttccaatgtaagaacctccctggatactcttggatgcggcagccattattctggtgagtattgtgc |
475 |
Q |
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| T |
22569271 |
ttccaatgtaagaacctccctggatactcttggatgcggcagccattattctggtgagttttgtgc |
22569336 |
T |
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