View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_3 (Length: 431)
Name: NF16663_low_3
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 53673359 - 53672979
Alignment:
| Q |
17 |
agatactatagaacagcaagcaatgttctgataacattgattgattttataccaaattcaattcacacaactaatagttttaaattattactttttgttg |
116 |
Q |
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| T |
53673359 |
agatactatagaacagcaagcaatgttctaataacattgattgattttataccaaattcaattcacacaactaatagttttaaattattactttttgttg |
53673260 |
T |
|
| Q |
117 |
catatattagattactgattttggactagcaaagtggcttcctaacaaatggactcaccatgctgtaatcccagttgagggaacatttggatatttagca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53673259 |
catatattagattactgattttggactagcaaagtggcttcctaacaaatggactcaccatgctgtaatccctgttgagggaacatttggatatttagca |
53673160 |
T |
|
| Q |
217 |
ccagaggtctttatgcatggtattgtggatgagaaaactgatatttttgcatttggtgttcttcttcttgagattgtaactggaagaagacctgttgatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673159 |
ccagaggtctttatgcatggtattgtggatgagaaaactgatatatttgcatttggtgttcttcttcttgagattgtaactggaagaagacctgttgatt |
53673060 |
T |
|
| Q |
317 |
catcaaagcaaaacattctcctatgggtaaatacgcctttcatttcatccatgatatcaatgtagcatctaaacttcagtg |
397 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673059 |
catcaaagcaaaacattctcctatgggtaaatatgcctttcatttcatccatgatatcaatgtagcatctaaacttcagtg |
53672979 |
T |
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