View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_4 (Length: 430)
Name: NF16663_low_4
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 46162081 - 46161666
Alignment:
| Q |
15 |
tcagcttcatcatactgaactagtcatctccattaaagcaacatgcagttatgttctcatat----tgaacaaaaagtaggcttcgccatttgttcccac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
46162081 |
tcagcttcatcatactgaactagtcatctccattaaagcaacatgcagttatgttcccatatatattgaacaaaaagtaggcttcgccatttgttcccac |
46161982 |
T |
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| Q |
111 |
cccagttgacagccgaagaagataattatatatttttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatgattatatgtggca |
210 |
Q |
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| T |
46161981 |
cccagttgacagctgaagaagataattatatattgttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatgat---atgtggca |
46161885 |
T |
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| Q |
211 |
gcatataacatagaatttgattagtcaatatctcttattattatgcattcttctcttaatttcttgtataaatctttcgtaacgaatagcactgctcctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46161884 |
gcatataacatagaatttgattagtcaatatctcttattattatgcattcttctcttaatttcttgtataaatctttcg-aacgaatagcactgctcctt |
46161786 |
T |
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| Q |
311 |
ggcccttgcttacgtcaaactcatacttaaaatggccaaactttgcataatcatgatatacatgggaactaaatattattcgattttaagccgaaatcat |
410 |
Q |
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| T |
46161785 |
ggcccttgcttacgtcaaactcatacttaaaatggccaaactttgcataatcatgatatacatgggaactaaatattattcgattttaagcggaaatcat |
46161686 |
T |
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| Q |
411 |
aatgttgttttctttttctt |
430 |
Q |
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| T |
46161685 |
aatgttgttttctttttctt |
46161666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 137 - 304
Target Start/End: Complemental strand, 46169285 - 46169121
Alignment:
| Q |
137 |
tatatatttttctgggaagatgtttattgttaagagaaaaagtttgacaagaaaataaatgattatatgtggcagcatataacatagaatttgattagtc |
236 |
Q |
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| T |
46169285 |
tatatattgttctgggaaaatgtttatcgttaaga--aaaagtttgacaagaaaataaatgattatatgtagcagcatgtaacatagaatttgattagtc |
46169188 |
T |
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| Q |
237 |
aatatctcttattattatgcattcttctcttaatttcttgtataaatctttcgtaacgaatagcactg |
304 |
Q |
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| T |
46169187 |
aa-atctcttattattatgcattcttctctttatttcttgtatagatctttcgtaacaaatagcactg |
46169121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 46245176 - 46245279
Alignment:
| Q |
15 |
tcagcttcatcatactgaactagtcatctccattaaagcaacatgcagttatgttctcatattgaacaaaaagtaggcttcgccatttgttcccacccca |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
46245176 |
tcagcttcatcatactgaactagtcatctccattgaagcatcatgcagttatgttcccatattgaacaaaacgtaggcttcaccatttgttcccacccca |
46245275 |
T |
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| Q |
115 |
gttg |
118 |
Q |
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|||| |
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| T |
46245276 |
gttg |
46245279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 46254864 - 46254967
Alignment:
| Q |
15 |
tcagcttcatcatactgaactagtcatctccattaaagcaacatgcagttatgttctcatattgaacaaaaagtaggcttcgccatttgttcccacccca |
114 |
Q |
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||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||| |
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| T |
46254864 |
tcagcttcatcgtactgaactagtcatctccattgaagcatcatgcagctatgttcccatattgaacaaatagtaggcttcaccaaatgttcccaaccca |
46254963 |
T |
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| Q |
115 |
gttg |
118 |
Q |
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|||| |
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| T |
46254964 |
gttg |
46254967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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