View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_5 (Length: 427)
Name: NF16663_low_5
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 23945065 - 23945457
Alignment:
| Q |
17 |
gaacggtaacaactttaatgtgggtaacggtaaaaacgaaaaatcaggaataatgatggaggagtttccgttcaaaactgatatcttgggtattaatggt |
116 |
Q |
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| T |
23945065 |
gaacgataacaacattaatgtgggtaacggtaaaaacgaaaaatcaggaataatgatggaggagattccgttcaaaactgatatcttgggtattaatggt |
23945164 |
T |
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| Q |
117 |
gaaccggattctttgcatggtgagtggattaaagtggaaagnnnnnnncgagtcaataaggctgggtcacgcattgctggtgcagacatgaaaggtacat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
23945165 |
gaaccggattctttgcatggtgagtggattaaagtggaaagaaaaaaacgagtcaataaggttggttcacgcattgctggtgcagacatgaaaggtacat |
23945264 |
T |
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| Q |
217 |
catttcaaaatcttaagaaaagaattaatgaattgaatgctgaaaaatacgatcatatgcatgaaaataggagcgggtacaaaccctcccaaattaactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
23945265 |
catttcaaaatcttaagaaaagaattaatgaattgaatgctgaaaaatacgatcatatgcatgaaataaggagcggttacaaaccctcccaaattaactc |
23945364 |
T |
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| Q |
317 |
ttctaatgctagcattaaagtaggnnnnnnnnnnnnnnnnngaactagaagtgatattggtacaagcaaaataggcataaataatgggaaacc |
409 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23945365 |
ttctaatgcaagcattaaagtacgaaaaaataaacaaaaaagaactagaagtgatattggtacaagaaaaataggcataaataatgggaaacc |
23945457 |
T |
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