View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16663_low_6 (Length: 352)
Name: NF16663_low_6
Description: NF16663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16663_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 1565482 - 1565157
Alignment:
| Q |
12 |
atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt |
111 |
Q |
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| T |
1565482 |
atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt |
1565383 |
T |
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| Q |
112 |
cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat |
211 |
Q |
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| T |
1565382 |
cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat |
1565283 |
T |
|
| Q |
212 |
agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatccatagatattttctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1565282 |
agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatccatagatattttctt |
1565183 |
T |
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| Q |
312 |
gtgagtaggagacgatgatctcattg |
337 |
Q |
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| T |
1565182 |
gtgagtaggagacgatgatctcattg |
1565157 |
T |
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