View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16664_high_1 (Length: 614)
Name: NF16664_high_1
Description: NF16664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16664_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 54262367 - 54262627
Alignment:
| Q |
16 |
atgaacatgaagcattgaagaatttcattcatcgaagcgttgaagaattgttggtatgcacgcacctagttttctactacaactaataagacgatgtatt |
115 |
Q |
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| T |
54262367 |
atgaacatgaagcattgaagaatttcattcatcgaagcattgaagaattgttggtatgcacgcacctagttttctactacaactaataagacgatgtatt |
54262466 |
T |
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| Q |
116 |
ggtaattatgagctacaatagagtatcaactgcaaggcaaaccaagtgtactatgcttgcatgttacaactacaatgttgctgcttcatttagatgtgaa |
215 |
Q |
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| T |
54262467 |
ggtaattatgagctacaatagagtatcaactgcaaggcaaaccaaatgtactatgcttgcatgttacaactacaatgttgctgcttcatttagatgtgaa |
54262566 |
T |
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| Q |
216 |
acttaggatgactgataacctgatatacataagcgaagaactataaattgtatctctcaat |
276 |
Q |
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| T |
54262567 |
acttaggatgactgataacctgatatacaaaagcgaagaactataaattgtatctctcaat |
54262627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 390 - 596
Target Start/End: Original strand, 54262628 - 54262834
Alignment:
| Q |
390 |
aaatgaatagcatcctgtcaagttttaggtgagggaccatttagaatctaaatacttttgatcgtgtgtagatgctgacaaataagtttgtaaggaaaaa |
489 |
Q |
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| T |
54262628 |
aaatgaatagcatcctgtcaacttttaggtgagggaccatttagaatctaaatacttttgatcgtgtgtagatgctgacaaataagtttgtaaggaaaaa |
54262727 |
T |
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| Q |
490 |
gaaatgggggtgagtgggtggggtgtaaaaaattgtggaaagaagggggataggtaacaatcataattggttttagggttgcgttagaaaaataatgcgg |
589 |
Q |
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| T |
54262728 |
gaaatgggggtgagtgagtggggtgtaaaaaattgtggaaagaagggggataggtaacaatcataattggttttagggttgcgttagaaaaataatgcgg |
54262827 |
T |
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| Q |
590 |
aacggag |
596 |
Q |
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| T |
54262828 |
aacggag |
54262834 |
T |
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