View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16664_high_4 (Length: 288)
Name: NF16664_high_4
Description: NF16664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16664_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 17857445 - 17857173
Alignment:
| Q |
1 |
gagaaacaaaagttggcatgcttggaaatgcagagcaggttagaaaaatagcgagcaggaccagcattctcgaaagatcttcacagcagttggttggttt |
100 |
Q |
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| T |
17857445 |
gagaaacaaaagttggcatgcttggaaatgcagagcaggttagaaaaatagcgagcaggaccagcattctcaaaagatcttcacagcagttggttggttt |
17857346 |
T |
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| Q |
101 |
tttctcttgtttcaatctaagttttaagaattttgtgatagagagccttgtattttgtacagtcaaactactacataaattttggaaagcaattcaatga |
200 |
Q |
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| T |
17857345 |
tttctcttgtttcaatctaagttttaagagttttgtgatagagagccttgtattttgtacagtcaaactactacataaattttggaaagcaattcaatga |
17857246 |
T |
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| Q |
201 |
aacagaatcatctaaaaagacagtatagatgataatctccaacag--aaaatgttttcttttagtttcattca |
271 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
17857245 |
aacagaatcatctaaaaagacagtatagatgatgatctccaacagaaaaaatgttttcttttagtatcattca |
17857173 |
T |
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