View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16664_low_2 (Length: 607)
Name: NF16664_low_2
Description: NF16664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16664_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 66 - 591
Target Start/End: Complemental strand, 49953878 - 49953354
Alignment:
| Q |
66 |
gatcatgctaacttgtgtcttaagaccgtctctaacagaggatatttgactctttaagcataagtacttaataggtacctttgtttgggagaatatatta |
165 |
Q |
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| T |
49953878 |
gatcatgctaacttgtatcttaagaccatctctaacagtggatatttgactctttaaacattagtacttaataggtacctttgtttgggagaatatatta |
49953779 |
T |
|
| Q |
166 |
ttagtgtttgtggagcaagaatattcaactaggtaccttcaacatatataggacaacagaaatgctgataccagaccctctaacacactccaattatagt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49953778 |
ttagtgtttgtggagcaagaatattcaactaggtaccttcaacatatataggacaagagaaatgctaataccagaccctctaacacactccaattatagt |
49953679 |
T |
|
| Q |
266 |
tcaacacctcatccactaataacttgctaccggtttcaccatttatttgtttgttgattttaacttaaaatnnnnnnngcttttcagcttcccgtgcact |
365 |
Q |
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| T |
49953678 |
tcaacacctcatccactaataacttgctacgggtttcactatttatttgtttgttgattttaacttaaaa-aaaaatagcttttcagcttcccgtgcact |
49953580 |
T |
|
| Q |
366 |
ttaacctaccaccatcatctcttccaaattcaaggatttatgaaggggacctgtnnnnnnnttacatccaaaacaatcattctttgctatttactttttg |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49953579 |
ttaacctaccaccatcatctcttccaaattcaaggatttatgaaggggacctgtaaaaaaattacatccaaaacaatcattctttgctatttactttttg |
49953480 |
T |
|
| Q |
466 |
gaaaaattcacttccccactttttgagttcaatttcaacaatctttctacaannnnnnnnncaattcaaacatgtttgaatatctttattttcgttctaa |
565 |
Q |
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| T |
49953479 |
gaaaaattcacttccccactttttgagttcaatttcaacaatctttctacaatatttttttcaattcaaacatgtttgaatatctttattttcgttctaa |
49953380 |
T |
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| Q |
566 |
tgtttattactgtcatgttttaattg |
591 |
Q |
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| T |
49953379 |
tgtttattactgtcatgttttaattg |
49953354 |
T |
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Back To:
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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 6787915 - 6787974
Alignment:
| Q |
223 |
agaaatgctgataccagaccctctaacacactccaattatagttcaacacctcatccact |
282 |
Q |
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| T |
6787915 |
agaaatgctaatatcacactctctaacacactccaattatggttcaacacgtcatccact |
6787974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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