View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16664_low_3 (Length: 398)
Name: NF16664_low_3
Description: NF16664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16664_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 1066952 - 1066572
Alignment:
| Q |
1 |
tgttgtgcgtttgggggaacttgatattggtgtgcttaaggaggttgtgagatattggtgctgggtaaagcatgcaagttgtacttcatcaaagctgata |
100 |
Q |
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| T |
1066952 |
tgttgtgcgtttggtggaacttgatattggtgtgcttaaggaggttgtgagatattggtgctgggtaaagcatgcaagttgtacttcatcaaagctgata |
1066853 |
T |
|
| Q |
101 |
ttcatgctgaggtcataactttaggtgtcttgaaattcattagactctttgtaaaggnnnnnnnaccaataatttaccacatgataaaagctgcaatttt |
200 |
Q |
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| T |
1066852 |
ttcatgctgaggtcatagctttaggtgtcttgaaattcattagactctttgtaaaggtttttttaccaataatttaccacatgataaaagctgcaatttt |
1066753 |
T |
|
| Q |
201 |
gaatttggatcacaattctgttttgcagttcttagtgtatggaattcatcggttttatattttcagcttaccactggtatcttgtccatactctcttact |
300 |
Q |
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| T |
1066752 |
gaatttggatcaaaattctgttttgcagttcttagtgtatggaattcatcggttttatattttcagcttaccactggtatcttgtccatactctcttaca |
1066653 |
T |
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| Q |
301 |
taacccaataaccagaaaggaattttgatagtgtttccatcattttagttatttaaacatttaattagatcttataagtac |
381 |
Q |
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| T |
1066652 |
taacccaataaccagaaaggaattttgataatgtttccatcattttagttatttaaacatttaattagatcttataagtac |
1066572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 1059491 - 1059436
Alignment:
| Q |
300 |
ttaacccaataaccagaaaggaattttgatagtgtttccatcattttagttattta |
355 |
Q |
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| T |
1059491 |
ttaacccaataaacagaaaataattttgatcatgtttccatcattttagttattta |
1059436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 29223346 - 29223275
Alignment:
| Q |
240 |
tggaattcatcggttttatattttcagcttaccactggtatcttgtccatactctcttacttaacccaataa |
311 |
Q |
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| T |
29223346 |
tggaattcatcggttttatattttcagcttaccactggtatcttgtccatactttcttacttaacccaataa |
29223275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 29223249 - 29223189
Alignment:
| Q |
321 |
aattttgatagtgtttccatcattttagttatttaaacatttaattagatcttataagtac |
381 |
Q |
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| T |
29223249 |
aattttgatcatgtttcaatcatttaagttatttaaacattcaattagatcttataagtac |
29223189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 10305869 - 10305819
Alignment:
| Q |
16 |
ggaacttgatattggtgtgcttaaggaggttgtgagatattggtgctgggt |
66 |
Q |
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|||||||||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
10305869 |
ggaacttgatattggtgtgcttaaggtggttgtgaaacattggtgctgggt |
10305819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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