View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16664_low_5 (Length: 316)

Name: NF16664_low_5
Description: NF16664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16664_low_5
NF16664_low_5
[»] chr2 (1 HSPs)
chr2 (2-306)||(2410780-2411072)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 2411072 - 2410780
Alignment:
Q  2 gaaatgaacccttgaataccgtttcttttattctcttactaccagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatc 101  Q
    |||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411072 gaaaagaacccttgaataccgtttcttttattctcttac---cagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatc 2410976  T
Q  102 taaacttgttgttacaaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgccta 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||        ||||||||||||||||||||||||||||||||||    
T  2410975 taaacttgttgttacaa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaataatgtcagaaaatcgattcttgccta 2410885  T
Q  202 taattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410884 taattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctga 2410785  T

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