View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_high_1 (Length: 562)
Name: NF16665_high_1
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 6 - 531
Target Start/End: Complemental strand, 49087755 - 49087230
Alignment:
| Q |
6 |
acacctgactgtgcttctccaggaacagcggcggaagcataacctgcggtgttatggcttggttcctataggacacaaaagcagagaacctgtcatagta |
105 |
Q |
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| T |
49087755 |
acacctgactgtgcttctccaggaacagcggcggaagcataacctgcggtgttatggcttggttcctataggacacaaaagcagagaacctgtcatagta |
49087656 |
T |
|
| Q |
106 |
agcagagacacgcttgtttgggttcttaatgaggatgttgaactgcaaggtggcggaaaggagcggtggtgaggttgtgttgaagccatagatggcagca |
205 |
Q |
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| T |
49087655 |
agcagagacacgcttgtttgggttcttaatgaggatgttgaactgcaaggtggcggaaaggagcggtggtgaggttgtgttgaagccatagatggcagca |
49087556 |
T |
|
| Q |
206 |
ccgacaaccgtgaagtggggtttgtgtggacggtagacaagccagagaacaagtagagtgacaccgattagtaggagaaagatggtgaggaatgtggcaa |
305 |
Q |
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| T |
49087555 |
ccgacaaccgtgaagtggggtttgtgtggacggtagacaagccagagaacaagtagagtgacaccgattagtaggagaaagatggtgaggaatgtggcaa |
49087456 |
T |
|
| Q |
306 |
aagcacgtccggaagaacttgtgccgtaggaagaagaaggtggtggaccagcaggtttgttcatttgtagtttgtcaggggggagatggtgttgtgggtt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49087455 |
aagcacgtccggaagaacttgtgccgtaggaagaagaaggtggtggaccagcaggtttgttcatttgtagtttgtcaggggggagatggtgttgttggtt |
49087356 |
T |
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| Q |
406 |
gggaggtggagactgagagcttgggttttcttccatgggagaggagatttggatatctagttattaaagttaaaggtggtggaatggaatatgtttcaac |
505 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49087355 |
tggaggttgagactgagagctttggttttcttccatgggagaggagattttgatatctagttattaaagttaaaggtggtggaatggaatatgtttcaac |
49087256 |
T |
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| Q |
506 |
tttgatagtgacacaaaaagaaagga |
531 |
Q |
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| T |
49087255 |
tttgatagtgacacaaaaataaagga |
49087230 |
T |
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