View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_high_11 (Length: 306)
Name: NF16665_high_11
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 15083689 - 15083826
Alignment:
| Q |
169 |
ataacatgtaccttaaaatctttctatttttagcctttattctctttgttgccgccaccgtcaccgccgtcaaccctggcgacaccctctccgcctccac |
268 |
Q |
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| T |
15083689 |
ataacatgtaccttaaaatctttctatttttagcctttattctctttgttgccgccaccgtcaccgccgtcaaccctggcgacaccctctccgcctccac |
15083788 |
T |
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| Q |
269 |
caaccaatcatggtcatcatcatcctccactttctccc |
306 |
Q |
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| T |
15083789 |
caaccaatcatggtcatcaccatcctccactttctccc |
15083826 |
T |
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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15083522 - 15083577
Alignment:
| Q |
1 |
ctccatttagtcaagacaagagccaagtcaaagtcttctctttcccacactctttc |
56 |
Q |
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| T |
15083522 |
ctccatttagtcaagacaagagccaagtcaaagtcttctctttcccacactctttc |
15083577 |
T |
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