View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_high_2 (Length: 544)
Name: NF16665_high_2
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 44162520 - 44163038
Alignment:
| Q |
18 |
acaaccaggttctgatcacaaactttgtaatttctgagagagaatacnnnnnnnncctacctgcaagcgccactgatagacacagcttgggtccttaatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44162520 |
acaaccaggttctgatcacaaactttgtaatttctgagagagaatacaaaaaaaccctacctgcaagcgccactgatagacacagcttgggtccttaatc |
44162619 |
T |
|
| Q |
118 |
ttaatgactatccatgactgtatatatttgtcccacgcatcataatacgctttgaggtttttatttacaatttctagctgcaaattaagagccgtttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44162620 |
ttaatgactatccatgactgtatatatttgtcccacgcatcataatacgctttgaggtttttatttacaatttctagctgcaaattaagaaccgtttatt |
44162719 |
T |
|
| Q |
218 |
atttctttatgcaaaagcgtaattcattgccaattcctcaacttatnnnnnnnnn-ggtagagaatttgcataaccagtaattctgcaacataaacacaa |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44162720 |
atttctttatacaaaagcgtaattcattgccaattcctcaacttataaaaaaaaaaggtagagaatttgcataaccagtaattctgcaacataaacacaa |
44162819 |
T |
|
| Q |
317 |
cgtgtatattaagaaacaaaaaagtaatttactgatcctaacctgcggatcaacagcttttacagcttcaactggaaggggcttgaaaccaagcatccag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44162820 |
ggtgtatattaagaaacaaaaaagtaatttactgatcctaacctgcggatcaacagcttttacagcttcaactggaaggggcttgaaaccaagcatccag |
44162919 |
T |
|
| Q |
417 |
ccttcaaacaacacaacctaaaagtatcattcgtggttgttaacagaagggtcaacacttgtttatgaaagtatatattcagatgaggtaaaggaccaat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44162920 |
ccttcaaacaacacaacctaaaagtatcattcgtggttgttaacagaagggtcaacacttgtttatgaaagtatatattcagatgaggtaaaggaccaat |
44163019 |
T |
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| Q |
517 |
tttttatgtcaagaataat |
535 |
Q |
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||||||||||||||||||| |
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| T |
44163020 |
tttttatgtcaagaataat |
44163038 |
T |
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