View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16665_high_20 (Length: 220)
Name: NF16665_high_20
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 42310135 - 42310335
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
42310135 |
ttgtgacaaacaaattaaagtgaaattgataaaagtcattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgcgatacttgtctac |
42310234 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
200 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310235 |
catagattatcactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
42310334 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
42310335 |
g |
42310335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 20905743 - 20905939
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20905743 |
ttgtgacaaacaaattaaagtgaaattgataaaaggcattgtaatacttgtctatcataataaagtgaaattgataaaagtcattgtgatacttgtctac |
20905842 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
200 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
20905843 |
cataaattatcagtaataacaataattgtttcataaaacatgcaacgctatttatataaaagattatgcaacatgag---gaagattctgcatatccttc |
20905939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 47249232 - 47249062
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47249232 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatatttgtctatcataataaagtgaaattgataaaagtcattgtgatacttgtctac |
47249133 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcag |
171 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47249132 |
cataaattatcagtaataacactaattgtttcataaaacatgcaacactatttatataaaagattatgcag |
47249062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 41325102 - 41325192
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41325102 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttgtctatcataataaagtgaaattgataaaagtcattgtgata |
41325192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 10009769 - 10009881
Alignment:
| Q |
61 |
taaagtgaaattgataaaagtcattgtgatagttgtctatcataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaa |
160 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||||||||| ||||||||| ||| |||| ||||| |
|
|
| T |
10009769 |
taaagcgaaattaataaaagtcattgtgatatttgtctaccataaattagtagtaataacagtaattgtttcataaaacatgcaatactgtttacataaa |
10009868 |
T |
|
| Q |
161 |
agattatgcagca |
173 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10009869 |
agattatgcagca |
10009881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 41325117 - 41325161
Alignment:
| Q |
61 |
taaagtgaaattgataaaagtcattgtgatagttgtctatcataa |
105 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
41325117 |
taaagtgaaattgataaaagccattgtaatacttgtctatcataa |
41325161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University