View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16665_high_21 (Length: 212)

Name: NF16665_high_21
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16665_high_21
NF16665_high_21
[»] chr3 (2 HSPs)
chr3 (19-187)||(45382702-45382880)
chr3 (104-150)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (99-179)||(27661703-27661783)
chr6 (99-136)||(26650237-26650274)
chr6 (99-136)||(26756205-26756242)
chr6 (95-135)||(12627824-12627864)
chr6 (99-139)||(29449688-29449728)
chr6 (24-74)||(8148268-8148318)
chr6 (27-80)||(20809178-20809231)
chr6 (99-128)||(28783014-28783043)
chr6 (81-138)||(34057962-34058019)
chr6 (25-61)||(29670971-29671007)
chr6 (102-138)||(30537508-30537544)
chr6 (27-75)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (99-139)||(43160491-43160531)
chr7 (90-137)||(10893872-10893919)
chr7 (99-141)||(650524-650566)
chr7 (99-135)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (99-138)||(28136673-28136712)
chr5 (99-136)||(645342-645379)
chr5 (90-135)||(11601688-11601733)
chr5 (27-75)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (32-74)||(14229600-14229642)
chr8 (99-139)||(32691750-32691790)
chr8 (90-138)||(41686804-41686852)
chr8 (90-138)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (45-141)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (99-149)||(10164460-10164510)
chr4 (99-137)||(28890768-28890806)
chr4 (95-131)||(29388374-29388410)
chr4 (99-139)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (90-135)||(264615-264660)
chr1 (39-79)||(27835482-27835522)
chr1 (99-135)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 45382880 - 45382702
Alignment:
Q  19 ataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacat-----------atgtgatta 107  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||           |||||||||    
T  45382880 ataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgatta 45382782  T
Q  108 cattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctct 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  45382781 cattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  104 attacattcaaatatgttattttcttaaattactactgatgttgacg 150  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 179  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattac 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattac 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  95 acatatgtgattacattcaaatatgttattttcttaaatta 135  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactac 139  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  24 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 74  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  27 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 80  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  99 atgtgattacattcaaatatgttattttct 128  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  81 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 138  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  25 aactttgtagcacagacatttctgatcgaaggcatgt 61  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  102 tgattacattcaaatatgttattttcttaaattacta 138  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  27 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 75  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactac 139  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  90 caccaacatatgtgattacattcaaatatgttattttcttaaattact 137  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactactg 141  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaatta 135  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattacta 138  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattac 136  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  90 caccaacatatgtgattacattcaaatatgttattttcttaaatta 135  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  27 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 75  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  32 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 74  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactac 139  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  90 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 138  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  90 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 138  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  45 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 141  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 149  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattact 137  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  95 acatatgtgattacattcaaatatgttattttcttaa 131  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaattactac 139  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  90 caccaacatatgtgattacattcaaatatgttattttcttaaatta 135  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  39 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 79  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  99 atgtgattacattcaaatatgttattttcttaaatta 135  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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