View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_high_4 (Length: 483)
Name: NF16665_high_4
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 15084256 - 15083798
Alignment:
| Q |
19 |
aaaccatgtgtccaaaaagtaacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15084256 |
aaaccatgtgtccaaaaagttacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
15084157 |
T |
|
| Q |
119 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15084156 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattcaaaatgaccaatttgccactatc |
15084057 |
T |
|
| Q |
219 |
ttcaatttcaactgatgtaccacccaaccttgttgtgttgctgtcccatttcacagcgcctgagccgtcgacaagacggagattcccgttggtttgaaac |
318 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15084056 |
ttgaattttaactgatgtaccacccaaccttgttgtgttgctgtcccatttcacagcgcctgagccgttgacaagacggagattcccgttggtttgaaac |
15083957 |
T |
|
| Q |
319 |
tgaaaggagcccccggagtcaactgcggtggagtttccagctgtccagacaactggagctccaccggagtagactactgcggcgaggaaggaaggagggg |
418 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15083956 |
tgaaaggagcccccggagtcaactgcgatggagtttccagctgtccagacaactggagctccaccggagtagactacggcggcgaggaaggaaggagggg |
15083857 |
T |
|
| Q |
419 |
ttgttggtggggtggtttggatgaaacggagggagaaagtggaggatgatgatgtccat |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
15083856 |
ttgttggtggggtggtttggatgaaacggagggagaaagtggaggatggtgatgaccat |
15083798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 15088079 - 15087875
Alignment:
| Q |
19 |
aaaccatgtgtccaaaaagtaacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
118 |
Q |
| |
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|||||||| ||||||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
15088079 |
aaaccatgagtccaaaaagttatactatcattccaaatcaaattcaaattaccattctttccaagactaaaactataatcaccagatttcaaaatcttac |
15087980 |
T |
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| Q |
119 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
218 |
Q |
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||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||| ||||| || |
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| T |
15087979 |
caacagtaaaattctgagaaggcaaaagggtatctgtaagatgatcaaagctcgaccaaacttcctttgttccgttcaaaatcgccaatttaccactgtc |
15087880 |
T |
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| Q |
219 |
ttcaa |
223 |
Q |
| |
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||||| |
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| T |
15087879 |
ttcaa |
15087875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 15087794 - 15087669
Alignment:
| Q |
304 |
ccgttggtttgaaactgaaaggagcccccggagtcaactgcggtggagtttccagctgtccagacaactggagctccaccggagtagactactgcggcga |
403 |
Q |
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|||||||| ||||||| ||||| || | |||||| || ||||||||||| || |||||||||||||| ||||||||||| ||||| || | ||||||| |
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| T |
15087794 |
ccgttggtaagaaactggaaggaaccactggagtcgacagcggtggagttacctgctgtccagacaacaggagctccaccagagtacacaatggcggcga |
15087695 |
T |
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| Q |
404 |
ggaaggaaggaggggttgttggtggg |
429 |
Q |
| |
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||||||||||||| | ||||||||| |
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| T |
15087694 |
ggaaggaaggaggagaggttggtggg |
15087669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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