View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16665_high_7 (Length: 400)
Name: NF16665_high_7
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 191 - 384
Target Start/End: Original strand, 13770213 - 13770406
Alignment:
| Q |
191 |
aattaacatgcacgatgcnnnnnnntagtctcatacaccttacctacctttatttatgatcaaaataatattcacaatcataatacgccgcatctatatg |
290 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13770213 |
aattaacatgcacgatgcaaaaaaatagtctcatacaccttacctacctttatttatgatcaaaataatattcacaatcataatacgccgcacctatatg |
13770312 |
T |
|
| Q |
291 |
gcttataatttcaataataatccaacatccaaaccgtccaagacagaaacaaaagagacaacaccataaaggaagaacacaaacaacatagttt |
384 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13770313 |
gcttataatttcaataataatcgaacatccaaaccgtccaagacagaaacaaaagagacaacaccataaaggaagaacacaaacaacatagttt |
13770406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 13770014 - 13770125
Alignment:
| Q |
9 |
attattcttcttctaacagttctatagatatcagattcatgcatccaatccattatatcacaatcaaaatccaatgtttgattaacacacatttcataca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13770014 |
attattcttcttctaacagttctatagatatcagattcatgcatccaatccattatatcacaatcaaaatccaatgtttgatta--acacatttcataca |
13770111 |
T |
|
| Q |
109 |
taaacgacaagtat |
122 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13770112 |
taaacaacaagtat |
13770125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University